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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:615.6 nTPM
GTEx:391.6 nTPM
FANTOM5:1267.7 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA002913
Neuronal cells Low



HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

615.6
Sample id Sample description nTPM
Hippocampus
nTPM: 615.6
1898 Male, age 80, left hemisphere 687.3
1911 Female, age 85, right hemisphere 653.3
1855 Male, age 76, left hemisphere 632.3
2529 Female, age 94, left hemisphere 628.2
2148 Female, age 91, left hemisphere 568.7
2621 Female, age 67, right hemisphere 523.9

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

391.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 391.6
Samples: 197

Max nTPM: 825.9
Min nTPM: 52.0
Std nTPM: 105.4
Median nTPM: 377.4
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 825.9
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 650.7
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 637.8
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 620.7
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 618.1
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 606.7
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 606.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 596.3
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 594.7
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 579.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 578.1
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 573.3
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 566.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 562.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 553.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 551.4
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 549.5
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 549.0
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 543.7
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 540.8
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 529.3
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 525.0
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 520.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 517.0
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 515.1
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 513.5
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 511.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 510.5
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 508.9
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 501.5
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 497.2
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 491.4
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 490.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 487.0
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 486.0
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 485.8
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 483.7
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 479.6
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 470.4
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 470.4
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 469.0
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 468.4
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 467.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 467.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 466.3
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 463.8
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 463.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 460.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 459.1
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 456.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 455.6
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 454.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 446.3
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 445.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 444.6
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 442.8
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 440.8
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 440.7
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 440.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 439.9
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 439.5
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 439.2
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 436.8
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 436.2
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 436.0
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 429.8
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 423.9
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 422.4
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 420.9
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 419.9
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 419.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 414.3
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 408.9
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 408.8
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 407.3
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 407.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 405.7
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 402.6
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 401.5
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 397.9
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 397.7
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 397.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 396.9
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 396.0
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 395.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 393.2
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 390.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 390.5
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 389.6
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 389.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 388.4
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 386.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 386.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 386.5
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 382.8
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 382.5
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 380.3
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 378.3
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 377.4
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 377.2
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 376.0
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 375.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 374.5
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 374.4
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 374.2
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 372.6
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 372.5
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 371.4
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 368.3
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 368.2
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 366.8
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 363.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 360.5
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 357.3
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 357.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 357.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 356.0
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 355.9
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 355.6
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 354.2
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 351.8
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 351.3
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 350.6
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 349.7
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 348.4
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 346.8
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 344.6
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 341.1
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 340.8
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 339.9
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 339.1
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 339.1
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 337.3
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 336.0
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 335.4
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 334.8
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 334.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 334.1
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 333.8
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 332.7
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 328.8
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 328.0
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 327.3
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 327.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 324.3
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 324.3
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 322.4
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 321.7
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 319.5
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 318.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 318.5
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 317.7
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 315.6
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 315.3
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 313.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 310.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 309.6
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 308.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 306.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 305.8
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 304.7
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 304.4
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 304.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 303.4
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 302.8
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 301.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 298.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 296.4
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 295.9
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 294.8
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 293.6
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 292.5
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 286.6
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 281.2
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 281.0
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 279.8
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 270.4
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 270.2
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 270.2
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 266.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 264.2
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 261.8
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 258.9
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 257.2
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 255.4
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 255.0
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 250.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 242.4
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 233.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 232.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 222.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 217.6
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 212.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 206.0
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 182.1
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 119.5
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 52.0
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1267.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1267.7
FF:10153-102I9 76 years, female 1292.3
FF:10169-103B7 60 years, female 1243.1

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