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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:239.0 nTPM
GTEx:239.0 nTPM
FANTOM5:147.8 Scaled Tags Per Million
Pig:7.5 nTPM
Mouse:128.4 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

239.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 239.0
Samples: 105

Max nTPM: 1105.3
Min nTPM: 35.6
Std nTPM: 170.2
Median nTPM:
308_1 70 years, female 1105.3
490_1 67 years, female 803.3
491_1 89 years, female 738.9
384_1 83 years, male 571.4
41_1 94 years, female 555.6
307_1 66 years, female 547.9
119_1 70 years, female 545.4
313_1 79 years, female 523.8
314_1 67 years, male 508.5
4_1 88 years, female 458.9
447_1 81 years, male 458.4
89_1 63 years, male 443.6
42_1 85 years, male 436.3
117_1 61 years, male 406.2
315_1 62 years, female 395.8
145_1 84 years, male 383.9
137_1 83 years, male 376.3
311_1 78 years, male 364.3
317_1 60 years, male 348.1
139_1 64 years, female 345.5
501_1 88 years, male 342.7
293_1 68 years, female 335.9
348_1 84 years, male 329.5
173_1 67 years, male 329.3
526_1 61 years, male 326.6
120_1 70 years, female 313.3
288_1 66 years, female 304.8
351_1 91 years, male 287.9
254_1 77 years, female 278.5
17_1 71 years, male 272.1
295_1 61 years, female 266.8
324_1 76 years, male 265.8
452_1 88 years, female 257.8
2_1 77 years, female 254.8
495_1 57 years, female 253.7
321_1 62 years, female 247.4
375_1 74 years, female 243.2
347_1 72 years, male 242.2
237_1 82 years, male 240.0
322_1 76 years, male 233.6
291_1 76 years, male 229.2
320_1 89 years, female 229.1
43_1 64 years, female 229.0
389_1 86 years, female 222.0
415_1 77 years, female 219.1
126_1 63 years, male 215.9
414_1 84 years, female 215.6
99_1 64 years, male 211.1
319_1 81 years, male 206.7
81_1 67 years, male 205.5
264_1 73 years, female 205.3
480_1 63 years, male 202.4
350_1 84 years, female 202.1
353_1 82 years, female 190.7
6_1 73 years, female 188.7
218_1 71 years, female 185.7
396_1 62 years, male 181.4
35_1 74 years, female 180.2
189_1 76 years, male 177.7
406_1 79 years, male 174.8
153_1 70 years, female 172.1
379_1 60 years, male 161.3
109_1 81 years, female 160.8
466_1 57 years, female 157.4
149_1 88 years, male 153.0
142_1 61 years, female 152.2
172_1 72 years, female 151.9
18_1 88 years, male 151.5
394_1 75 years, female 146.8
32_1 67 years, male 142.6
349_1 83 years, male 142.6
413_1 59 years, female 139.7
115_1 83 years, male 139.4
518_1 75 years, female 138.9
386_1 76 years, male 133.5
354_1 81 years, female 132.2
499_1 55 years, female 131.7
356_1 87 years, female 128.7
265_1 87 years, male 126.4
376_1 75 years, female 125.7
162_1 79 years, female 124.8
251_1 78 years, male 121.3
503_1 68 years, male 118.6
243_1 75 years, male 118.4
468_1 89 years, male 115.4
506_1 65 years, male 111.9
316_1 62 years, male 103.4
217_1 76 years, male 102.0
9_1 66 years, female 101.3
405_1 91 years, male 98.4
377_1 82 years, female 96.8
318_1 68 years, male 92.3
517_1 88 years, male 91.9
246_1 77 years, male 90.4
266_1 85 years, male 88.9
163_1 78 years, male 83.0
286_1 68 years, female 78.4
404_1 82 years, female 76.7
292_1 71 years, male 66.4
355_1 70 years, female 64.9
177_1 74 years, male 63.5
425_1 59 years, female 54.1
335_1 73 years, female 50.7
229_1 69 years, female 43.7
352_1 62 years, male 35.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

147.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 147.8
FF:10030-101E3 24-65 years, mixed 147.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7.5
Pig sample Sample description nTPM
Retina
nTPM: 7.5
Samples: 4

Max nTPM: 8.1
Min nTPM: 6.9
Sample A Female 6.9
Sample B Female 7.7
Sample C Male 8.1
Sample D Male 7.3

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.4
Mouse sample Sample description nTPM
Retina
nTPM: 128.4
Samples: 4

Max nTPM: 156.1
Min nTPM: 110.9
Sample A Male 156.1
Sample B Male 115.6
Sample C Female 131.0
Sample D Female 110.9

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