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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
High
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
734.2
nTPM
GTEx:
734.2
nTPM
FANTOM5:
259.7
Scaled Tags Per Million
Pig:
224.3
nTPM
Mouse:
2506.7
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA005561
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Medium
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA075056
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
734.2
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 734.2
Samples: 105
Max nTPM: 1489.0
Min nTPM: 102.7
Std nTPM: 308.0
Median nTPM:
352_1
62 years, male
1489.0
319_1
81 years, male
1409.6
394_1
75 years, female
1330.5
377_1
82 years, female
1280.4
425_1
59 years, female
1270.2
163_1
78 years, male
1227.5
218_1
71 years, female
1222.4
321_1
62 years, female
1211.3
355_1
70 years, female
1149.6
389_1
86 years, female
1122.2
384_1
83 years, male
1096.5
172_1
72 years, female
1076.8
406_1
79 years, male
1069.8
375_1
74 years, female
1062.5
243_1
75 years, male
1058.5
246_1
77 years, male
1054.5
356_1
87 years, female
1045.8
6_1
73 years, female
1044.8
350_1
84 years, female
1044.8
386_1
76 years, male
1040.3
115_1
83 years, male
1026.9
354_1
81 years, female
1019.2
347_1
72 years, male
1004.1
503_1
68 years, male
1004.0
189_1
76 years, male
988.9
376_1
75 years, female
969.4
318_1
68 years, male
965.9
526_1
61 years, male
957.3
177_1
74 years, male
951.4
349_1
83 years, male
937.8
447_1
81 years, male
919.0
517_1
88 years, male
912.4
404_1
82 years, female
911.2
468_1
89 years, male
910.6
251_1
78 years, male
890.0
480_1
63 years, male
874.2
405_1
91 years, male
870.7
291_1
76 years, male
862.5
379_1
60 years, male
856.3
292_1
71 years, male
849.2
237_1
82 years, male
844.8
153_1
70 years, female
842.5
320_1
89 years, female
837.3
229_1
69 years, female
825.2
316_1
62 years, male
807.5
351_1
91 years, male
793.0
335_1
73 years, female
772.8
322_1
76 years, male
771.2
265_1
87 years, male
765.3
126_1
63 years, male
764.4
254_1
77 years, female
763.7
286_1
68 years, female
760.9
35_1
74 years, female
732.0
99_1
64 years, male
718.3
9_1
66 years, female
717.9
217_1
76 years, male
713.4
18_1
88 years, male
706.3
293_1
68 years, female
706.0
4_1
88 years, female
702.4
173_1
67 years, male
684.3
295_1
61 years, female
677.8
353_1
82 years, female
675.8
396_1
62 years, male
669.9
348_1
84 years, male
668.6
264_1
73 years, female
657.1
518_1
75 years, female
656.4
2_1
77 years, female
647.9
145_1
84 years, male
615.8
452_1
88 years, female
609.5
506_1
65 years, male
592.1
17_1
71 years, male
587.2
317_1
60 years, male
586.2
266_1
85 years, male
565.8
42_1
85 years, male
565.2
137_1
83 years, male
550.6
109_1
81 years, female
515.1
120_1
70 years, female
495.1
324_1
76 years, male
486.4
142_1
61 years, female
478.9
311_1
78 years, male
474.7
117_1
61 years, male
473.1
307_1
66 years, female
450.1
139_1
64 years, female
443.9
162_1
79 years, female
441.7
81_1
67 years, male
419.8
499_1
55 years, female
411.0
314_1
67 years, male
406.9
315_1
62 years, female
388.8
288_1
66 years, female
381.7
41_1
94 years, female
367.3
32_1
67 years, male
350.8
313_1
79 years, female
349.0
415_1
77 years, female
341.3
414_1
84 years, female
338.0
43_1
64 years, female
332.4
466_1
57 years, female
318.6
119_1
70 years, female
312.6
89_1
63 years, male
274.7
501_1
88 years, male
240.3
413_1
59 years, female
236.2
149_1
88 years, male
212.4
495_1
57 years, female
201.3
308_1
70 years, female
185.2
490_1
67 years, female
123.2
491_1
89 years, female
102.7
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
