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COL9A2
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  • COL9A2
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CARTILAGE CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS EYE FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE
MIDBRAIN NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE
SKIN SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:127.9 nTPM
HPA Brain:76.2 nTPM
GTEx:127.9 nTPM
FANTOM5:14.3 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 59.4
2194 Female, age 79, both hemispheres 66.8
1981 Female, age 72, midline 62.9
2816 Male, age 47, midline 61.9
2048 Male, age 55, midline 56.0
2565 Male, age 75, midline 49.3
Cervical spinal cord, dorsal horn
nTPM: 56.4
2173 Female, age 72, unknown 85.8
2296 Male, age 66, both hemispheres 71.2
1877 Male, age 55, unknown 53.4
2069 Male, age 47, both hemispheres 44.7
2297 Male, age 75, both hemispheres 41.9
2721 Male, age 90, both hemispheres 41.6
Cervical spinal cord, ventral horn
nTPM: 76.2
2820 Female, age 79, both hemispheres 88.9
2068 Male, age 55, unknown 85.8
2295 Male, age 66, both hemispheres 76.2
2809 Male, age 90, both hemispheres 75.0
2480 Male, age 75, both hemispheres 74.0
2098 Female, age 72, unknown 57.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 127.9
Samples: 159

Max nTPM: 251.7
Min nTPM: 40.6
Std nTPM: 45.2
Median nTPM: 125.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 251.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 244.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 227.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 224.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 218.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 215.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 208.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 207.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 206.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 205.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 204.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 201.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 193.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 192.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 189.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 186.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 184.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 184.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 183.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 183.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 182.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 181.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 176.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 176.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 175.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 174.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 172.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 171.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 170.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 170.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 169.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 169.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 168.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 167.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 164.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 162.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 162.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 162.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 161.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 161.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 158.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 158.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 156.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 156.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 156.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 155.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 155.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 153.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 153.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 152.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 150.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 149.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 148.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 147.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 147.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 146.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 146.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 145.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 145.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 136.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 135.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 134.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 134.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 134.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 133.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 133.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 133.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 131.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 130.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 130.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 130.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 129.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 129.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 129.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 128.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 128.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 127.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 126.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 126.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 125.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 124.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 124.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 123.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 122.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 122.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 121.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 120.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 120.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 118.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 118.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 118.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 116.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 115.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 115.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 114.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 113.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 112.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 112.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 111.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 111.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 107.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 106.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 105.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 104.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 104.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 104.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 103.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 102.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 101.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 101.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 101.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 98.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 98.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 97.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 97.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 96.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 96.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 95.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 95.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 95.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 94.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 94.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 94.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 92.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 89.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 89.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 88.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 88.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 87.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 85.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 85.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 84.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 84.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 83.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 82.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 82.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 77.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 76.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 75.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 71.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 71.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 71.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 70.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 70.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 69.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 66.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 64.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 63.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 61.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 59.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 57.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 55.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 53.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 50.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 46.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 46.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 43.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 43.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 40.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

14.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 14.3
FF:10181-103D1 60 years, female 20.6
FF:10159-103A6 76 years, female 7.9

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