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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:183.2 nTPM
HPA Brain:106.7 nTPM
GTEx:183.2 nTPM
FANTOM5:289.1 Scaled Tags Per Million
Pig:98.7 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

106.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 91.4
1981 Female, age 72, midline 116.2
2048 Male, age 55, midline 107.2
2816 Male, age 47, midline 85.9
2194 Female, age 79, both hemispheres 77.6
2565 Male, age 75, midline 70.0
Cervical spinal cord, dorsal horn
nTPM: 102.3
2173 Female, age 72, unknown 147.4
2296 Male, age 66, both hemispheres 144.5
2069 Male, age 47, both hemispheres 107.2
1877 Male, age 55, unknown 87.6
2297 Male, age 75, both hemispheres 63.7
2721 Male, age 90, both hemispheres 63.5
Cervical spinal cord, ventral horn
nTPM: 106.7
2098 Female, age 72, unknown 137.8
2480 Male, age 75, both hemispheres 112.8
2295 Male, age 66, both hemispheres 110.3
2809 Male, age 90, both hemispheres 105.9
2068 Male, age 55, unknown 96.9
2820 Female, age 79, both hemispheres 76.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

183.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 183.2
Samples: 159

Max nTPM: 290.8
Min nTPM: 62.8
Std nTPM: 50.7
Median nTPM: 184.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 290.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 285.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 280.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 276.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 272.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 271.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 268.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 267.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 267.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 265.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 262.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 257.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 256.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 255.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 255.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 251.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 249.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 247.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 245.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 245.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 244.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 241.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 240.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 238.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 236.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 236.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 234.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 233.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 233.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 231.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 231.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 227.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 227.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 227.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 225.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 225.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 224.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 224.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 223.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 221.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 219.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 219.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 217.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 214.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 213.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 213.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 209.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 209.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 208.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 208.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 207.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 205.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 205.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 205.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 204.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 204.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 203.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 203.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 202.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 201.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 201.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 201.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 200.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 199.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 197.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 196.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 196.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 193.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 191.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 190.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 188.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 188.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 187.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 187.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 186.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 185.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 185.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 185.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 185.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 184.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 184.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 183.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 183.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 181.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 179.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 179.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 179.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 179.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 178.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 177.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 176.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 176.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 176.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 175.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 175.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 174.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 173.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 173.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 172.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 170.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 168.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 168.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 167.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 166.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 163.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 163.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 159.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 159.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 158.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 156.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 155.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 155.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 155.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 154.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 153.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 152.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 150.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 150.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 149.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 149.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 148.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 144.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 142.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 142.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 142.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 142.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 141.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 139.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 138.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 133.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 133.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 132.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 132.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 129.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 127.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 125.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 125.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 120.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 118.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 118.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 117.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 111.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 110.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 105.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 105.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 105.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 104.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 102.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 102.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 101.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 98.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 98.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 94.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 93.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 89.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 80.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 72.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 67.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 62.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

289.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 289.1
FF:10159-103A6 76 years, female 320.6
FF:10181-103D1 60 years, female 257.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

98.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 94.0
Samples: 4

Max nTPM: 116.7
Min nTPM: 81.0
Sample A Female 81.0
Sample B Female 91.8
Sample C Male 116.7
Sample D Male 86.4
Ventral spinal cord
nTPM: 98.7
Samples: 4

Max nTPM: 112.8
Min nTPM: 92.8
Sample A Female 94.2
Sample B Female 92.8
Sample C Male 94.9
Sample D Male 112.8

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