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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:19.8 nTPM
GTEx:19.8 nTPM
FANTOM5:54.1 Scaled Tags Per Million
Pig:32.1 nTPM
Mouse:28.2 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

19.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 19.8
Samples: 105

Max nTPM: 33.7
Min nTPM: 13.3
Std nTPM: 3.6
Median nTPM:
322_1 76 years, male 33.7
413_1 59 years, female 30.7
218_1 71 years, female 29.2
320_1 89 years, female 27.0
43_1 64 years, female 26.1
173_1 67 years, male 26.0
321_1 62 years, female 25.9
386_1 76 years, male 25.3
348_1 84 years, male 25.2
377_1 82 years, female 25.1
501_1 88 years, male 25.1
318_1 68 years, male 24.4
4_1 88 years, female 24.0
375_1 74 years, female 24.0
379_1 60 years, male 23.9
319_1 81 years, male 23.8
229_1 69 years, female 23.5
139_1 64 years, female 23.3
351_1 91 years, male 22.7
41_1 94 years, female 22.6
452_1 88 years, female 22.6
295_1 61 years, female 22.3
35_1 74 years, female 22.1
237_1 82 years, male 22.0
316_1 62 years, male 22.0
311_1 78 years, male 21.8
335_1 73 years, female 21.7
353_1 82 years, female 21.7
404_1 82 years, female 21.7
163_1 78 years, male 21.4
396_1 62 years, male 21.4
491_1 89 years, female 21.4
251_1 78 years, male 21.3
18_1 88 years, male 21.1
350_1 84 years, female 21.0
518_1 75 years, female 21.0
243_1 75 years, male 20.6
292_1 71 years, male 20.5
153_1 70 years, female 20.3
149_1 88 years, male 20.1
217_1 76 years, male 20.1
6_1 73 years, female 20.0
17_1 71 years, male 20.0
347_1 72 years, male 20.0
32_1 67 years, male 19.9
405_1 91 years, male 19.8
142_1 61 years, female 19.7
177_1 74 years, male 19.6
293_1 68 years, female 19.6
307_1 66 years, female 19.6
81_1 67 years, male 19.5
264_1 73 years, female 19.4
324_1 76 years, male 19.4
406_1 79 years, male 19.3
490_1 67 years, female 19.2
314_1 67 years, male 19.1
42_1 85 years, male 18.8
291_1 76 years, male 18.8
145_1 84 years, male 18.6
172_1 72 years, female 18.6
246_1 77 years, male 18.6
288_1 66 years, female 18.6
384_1 83 years, male 18.6
119_1 70 years, female 18.5
506_1 65 years, male 18.4
315_1 62 years, female 18.1
356_1 87 years, female 18.1
447_1 81 years, male 18.1
495_1 57 years, female 18.1
317_1 60 years, male 18.0
89_1 63 years, male 17.9
117_1 61 years, male 17.9
265_1 87 years, male 17.8
286_1 68 years, female 17.7
254_1 77 years, female 17.6
308_1 70 years, female 17.6
376_1 75 years, female 17.6
120_1 70 years, female 17.5
313_1 79 years, female 17.5
468_1 89 years, male 17.4
2_1 77 years, female 17.3
352_1 62 years, male 17.3
517_1 88 years, male 17.2
137_1 83 years, male 17.0
126_1 63 years, male 16.9
266_1 85 years, male 16.8
355_1 70 years, female 16.8
415_1 77 years, female 16.8
425_1 59 years, female 16.3
109_1 81 years, female 16.2
466_1 57 years, female 15.9
99_1 64 years, male 15.8
189_1 76 years, male 15.8
480_1 63 years, male 15.8
526_1 61 years, male 15.8
115_1 83 years, male 15.7
162_1 79 years, female 15.6
414_1 84 years, female 15.5
354_1 81 years, female 15.3
349_1 83 years, male 15.1
389_1 86 years, female 14.9
9_1 66 years, female 14.3
503_1 68 years, male 14.2
499_1 55 years, female 14.1
394_1 75 years, female 13.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

54.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 54.1
FF:10030-101E3 24-65 years, mixed 54.1

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.1
Pig sample Sample description nTPM
Retina
nTPM: 32.2
Samples: 4

Max nTPM: 38.5
Min nTPM: 26.9
Sample A Female 28.8
Sample B Female 26.9
Sample C Male 38.5
Sample D Male 34.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

28.2
Mouse sample Sample description nTPM
Retina
nTPM: 28.2
Samples: 4

Max nTPM: 36.7
Min nTPM: 23.1
Sample A Male 23.1
Sample B Male 25.3
Sample C Female 27.6
Sample D Female 36.7

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