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DKK3
HPA
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  • DKK3
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

DKK3
Synonyms CRRL, REIC, RIG
Gene descriptioni

Full gene name according to HGNC.

Dickkopf WNT signaling pathway inhibitor 3
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Secreted
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 11
Cytoband p15.3
Chromosome location (bp) 11956207 - 12009769
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

7
Ensembl ENSG00000050165 (version 109)
Entrez gene 27122
HGNC HGNC:2893
UniProt Q9UBP4 (UniProt - Evidence at protein level)
neXtProt NX_Q9UBP4
GeneCards DKK3
Antibodypedia DKK3 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Antagonizes canonical Wnt signaling by inhibiting LRP5/6 interaction with Wnt and by forming a ternary complex with the transmembrane protein KREMEN that promotes internalization of LRP5/6. DKKs play an important role in vertebrate development, where they locally inhibit Wnt regulated processes such as antero-posterior axial patterning, limb development, somitogenesis and eye formation. In the adult, Dkks are implicated in bone formation and bone disease, cancer and Alzheimer disease (By similarity).... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Developmental protein
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Wnt signaling pathway
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a protein that is a member of the dickkopf family. The secreted protein contains two cysteine rich regions and is involved in embryonic development through its interactions with the Wnt signaling pathway. The expression of this gene is decreased in a variety of cancer cell lines and it may function as a tumor suppressor gene. Alternative splicing results in multiple transcript variants encoding the same protein. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
DKK3-201
ENSP00000314910
ENST00000326932
Q9UBP4
[Direct mapping] Dickkopf-related protein 3
Show all
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005615 [extracellular space]
GO:0007275 [multicellular organism development]
GO:0009653 [anatomical structure morphogenesis]
GO:0016055 [Wnt signaling pathway]
GO:0017015 [regulation of transforming growth factor beta receptor signaling pathway]
GO:0030178 [negative regulation of Wnt signaling pathway]
GO:0030325 [adrenal gland development]
GO:0032348 [negative regulation of aldosterone biosynthetic process]
GO:0039706 [co-receptor binding]
GO:0045892 [negative regulation of DNA-templated transcription]
GO:0048019 [receptor antagonist activity]
GO:0090090 [negative regulation of canonical Wnt signaling pathway]
GO:1902613 [negative regulation of anti-Mullerian hormone signaling pathway]
GO:2000065 [negative regulation of cortisol biosynthetic process]
GO:2000272 [negative regulation of signaling receptor activity]
Show all
350 aa
38.4 kDa
Yes 0
DKK3-202
ENSP00000379762
ENST00000396505
Q9UBP4
[Direct mapping] Dickkopf-related protein 3
Show all
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005615 [extracellular space]
GO:0007275 [multicellular organism development]
GO:0009653 [anatomical structure morphogenesis]
GO:0016055 [Wnt signaling pathway]
GO:0017015 [regulation of transforming growth factor beta receptor signaling pathway]
GO:0030178 [negative regulation of Wnt signaling pathway]
GO:0030325 [adrenal gland development]
GO:0032348 [negative regulation of aldosterone biosynthetic process]
GO:0039706 [co-receptor binding]
GO:0045892 [negative regulation of DNA-templated transcription]
GO:0048019 [receptor antagonist activity]
GO:0090090 [negative regulation of canonical Wnt signaling pathway]
GO:1902613 [negative regulation of anti-Mullerian hormone signaling pathway]
GO:2000065 [negative regulation of cortisol biosynthetic process]
GO:2000272 [negative regulation of signaling receptor activity]
Show all
350 aa
38.4 kDa
Yes 0
DKK3-203
ENSP00000433112
ENST00000525493
F6SYF8
[Direct mapping] Dickkopf-related protein 3
Show all
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005576 [extracellular region]
GO:0007275 [multicellular organism development]
GO:0030178 [negative regulation of Wnt signaling pathway]
Show all
364 aa
39.9 kDa
Yes 0
DKK3-208
ENSP00000431604
ENST00000529338
E9PKK9
[Direct mapping] Dickkopf-related protein 3
Show all
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Protein evidence (Ezkurdia et al 2014)
Show all
132 aa
14.3 kDa
Yes 0
DKK3-213
ENSP00000435269
ENST00000533813
E9PKW6
[Direct mapping] Dickkopf-related protein 3
Show all
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005576 [extracellular region]
GO:0007275 [multicellular organism development]
GO:0030178 [negative regulation of Wnt signaling pathway]
Show all
234 aa
25.6 kDa
Yes 0
DKK3-216
ENSP00000436645
ENST00000534511
E9PHY3
[Direct mapping] Dickkopf-related protein 3
Show all
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005576 [extracellular region]
GO:0007275 [multicellular organism development]
GO:0030178 [negative regulation of Wnt signaling pathway]
Show all
183 aa
20 kDa
Yes 0
DKK3-217
ENSP00000506835
ENST00000683431
Q9UBP4
[Direct mapping] Dickkopf-related protein 3
Show all
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005615 [extracellular space]
GO:0007275 [multicellular organism development]
GO:0009653 [anatomical structure morphogenesis]
GO:0016055 [Wnt signaling pathway]
GO:0017015 [regulation of transforming growth factor beta receptor signaling pathway]
GO:0030178 [negative regulation of Wnt signaling pathway]
GO:0030325 [adrenal gland development]
GO:0032348 [negative regulation of aldosterone biosynthetic process]
GO:0039706 [co-receptor binding]
GO:0045892 [negative regulation of DNA-templated transcription]
GO:0048019 [receptor antagonist activity]
GO:0090090 [negative regulation of canonical Wnt signaling pathway]
GO:1902613 [negative regulation of anti-Mullerian hormone signaling pathway]
GO:2000065 [negative regulation of cortisol biosynthetic process]
GO:2000272 [negative regulation of signaling receptor activity]
Show all
350 aa
38.4 kDa
Yes 0

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