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ARHGEF5
HPA
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  • ARHGEF5
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

ARHGEF5
Synonyms GEF5, P60, TIM, TIM1
Gene descriptioni

Full gene name according to HGNC.

Rho guanine nucleotide exchange factor 5
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 7
Cytoband q35
Chromosome location (bp) 144355288 - 144380632
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

4
Ensembl ENSG00000050327 (version 109)
Entrez gene 7984
HGNC HGNC:13209
UniProt Q12774 (UniProt - Evidence at protein level)
neXtProt NX_Q12774
GeneCards ARHGEF5
Antibodypedia ARHGEF5 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Guanine nucleotide exchange factor which activates Rho GTPases 1. Strongly activates RHOA 2. Also strongly activates RHOB, weakly activates RHOC and RHOG and shows no effect on RHOD, RHOV, RHOQ or RAC1 (By similarity). Involved in regulation of cell shape and actin cytoskeletal organization 3. Plays a role in actin organization by generating a loss of actin stress fibers and the formation of membrane ruffles and filopodia 4. Required for SRC-induced podosome formation (By similarity). Involved in positive regulation of immature dendritic cell migration (By similarity).... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Guanine-nucleotide releasing factor
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Lipid-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

Rho GTPases play a fundamental role in numerous cellular processes initiated by extracellular stimuli that work through G protein coupled receptors. The encoded protein may form a complex with G proteins and stimulate Rho-dependent signals. This protein may be involved in the control of cytoskeletal organization. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
ARHGEF5-201
ENSP00000056217
ENST00000056217
Q12774
[Direct mapping] Rho guanine nucleotide exchange factor 5
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0002102 [podosome]
GO:0002408 [myeloid dendritic cell chemotaxis]
GO:0005085 [guanyl-nucleotide exchange factor activity]
GO:0005515 [protein binding]
GO:0005525 [GTP binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0008289 [lipid binding]
GO:0030036 [actin cytoskeleton organization]
GO:0032956 [regulation of actin cytoskeleton organization]
GO:0035556 [intracellular signal transduction]
GO:0042995 [cell projection]
GO:0043087 [regulation of GTPase activity]
GO:0043507 [positive regulation of JUN kinase activity]
GO:0043547 [positive regulation of GTPase activity]
GO:0051056 [regulation of small GTPase mediated signal transduction]
GO:0051091 [positive regulation of DNA-binding transcription factor activity]
GO:0051493 [regulation of cytoskeleton organization]
GO:0051496 [positive regulation of stress fiber assembly]
GO:0061484 [hematopoietic stem cell homeostasis]
GO:0070161 [anchoring junction]
GO:0071803 [positive regulation of podosome assembly]
GO:0071944 [cell periphery]
GO:0090630 [activation of GTPase activity]
GO:1904591 [positive regulation of protein import]
Show all
1597 aa
176.8 kDa
No 0
ARHGEF5-202
ENSP00000418227
ENST00000471847
Q12774
[Direct mapping] Rho guanine nucleotide exchange factor 5
Show all
A0A090N7S2
[Target identity:100%; Query identity:100%] Rho guanine nucleotide exchange factor (GEF) 5
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0002102 [podosome]
GO:0005085 [guanyl-nucleotide exchange factor activity]
GO:0005515 [protein binding]
GO:0005525 [GTP binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0008289 [lipid binding]
GO:0032956 [regulation of actin cytoskeleton organization]
GO:0035556 [intracellular signal transduction]
GO:0042995 [cell projection]
GO:0043087 [regulation of GTPase activity]
GO:0043507 [positive regulation of JUN kinase activity]
GO:0051056 [regulation of small GTPase mediated signal transduction]
GO:0051091 [positive regulation of DNA-binding transcription factor activity]
GO:0051493 [regulation of cytoskeleton organization]
GO:0051496 [positive regulation of stress fiber assembly]
GO:0070161 [anchoring junction]
GO:0071944 [cell periphery]
GO:0090630 [activation of GTPase activity]
GO:1904591 [positive regulation of protein import]
Show all
519 aa
60.1 kDa
No 0
ARHGEF5-203
ENSP00000418745
ENST00000474817
H0Y895
[Direct mapping] Rho guanine nucleotide exchange factor 5
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005085 [guanyl-nucleotide exchange factor activity]
GO:0005515 [protein binding]
GO:0005654 [nucleoplasm]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0035556 [intracellular signal transduction]
Show all
797 aa
89.1 kDa
No 0
ARHGEF5-204
ENSP00000417979
ENST00000498580
C9J591
[Direct mapping] Rho guanine nucleotide exchange factor 5
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
181 aa
20.2 kDa
No 0

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