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SLC4A8
HPA
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  • SLC4A8
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SLC4A8
Synonyms NBC3
Gene descriptioni

Full gene name according to HGNC.

Solute carrier family 4 member 8
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Metabolic proteins
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 12
Cytoband q13.13
Chromosome location (bp) 51391317 - 51515763
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

4
Ensembl ENSG00000050438 (version 109)
Entrez gene 9498
HGNC HGNC:11034
UniProt Q2Y0W8 (UniProt - Evidence at protein level)
neXtProt NX_Q2Y0W8
GeneCards SLC4A8
Antibodypedia SLC4A8 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Mediates electroneutral sodium- and carbonate-dependent chloride-HCO3(-) exchange with a Na(+):HCO3(-) stoichiometry of 2:1 1. Plays a major role in pH regulation in neurons (By similarity). Mediates sodium reabsorption in the renal cortical collecting ducts (By similarity).... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Anion exchange, Antiport, Ion transport, Sodium transport, Transport
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Sodium, Zinc
Gene summary (Entrez)i

Useful information about the gene from Entrez

The protein encoded by this gene is a membrane protein that functions to transport sodium and bicarbonate ions across the cell membrane. The encoded protein is important for pH regulation in neurons. The activity of this protein can be inhibited by 4,4'-Di-isothiocyanatostilbene-2,2'-disulfonic acid (DIDS). Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Apr 2012]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SLC4A8-202
ENSP00000351483
ENST00000358657
Q2Y0W8
[Direct mapping] Electroneutral sodium bicarbonate exchanger 1
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005452 [solute:inorganic anion antiporter activity]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0006820 [anion transport]
GO:0008021 [synaptic vesicle]
GO:0008509 [anion transmembrane transporter activity]
GO:0008510 [sodium:bicarbonate symporter activity]
GO:0015081 [sodium ion transmembrane transporter activity]
GO:0015106 [bicarbonate transmembrane transporter activity]
GO:0015108 [chloride transmembrane transporter activity]
GO:0015297 [antiporter activity]
GO:0015701 [bicarbonate transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016324 [apical plasma membrane]
GO:0022857 [transmembrane transporter activity]
GO:0030425 [dendrite]
GO:0030672 [synaptic vesicle membrane]
GO:0031410 [cytoplasmic vesicle]
GO:0032279 [asymmetric synapse]
GO:0032280 [symmetric synapse]
GO:0032809 [neuronal cell body membrane]
GO:0035725 [sodium ion transmembrane transport]
GO:0042391 [regulation of membrane potential]
GO:0042734 [presynaptic membrane]
GO:0043005 [neuron projection]
GO:0043195 [terminal bouton]
GO:0043679 [axon terminus]
GO:0045202 [synapse]
GO:0050801 [ion homeostasis]
GO:0050804 [modulation of chemical synaptic transmission]
GO:0051453 [regulation of intracellular pH]
GO:0055085 [transmembrane transport]
GO:0097386 [glial cell projection]
GO:0097457 [hippocampal mossy fiber]
GO:0098793 [presynapse]
GO:0098978 [glutamatergic synapse]
GO:0140892 []
GO:0150104 [transport across blood-brain barrier]
GO:1902476 [chloride transmembrane transport]
GO:2000302 [positive regulation of synaptic vesicle exocytosis]
Show all
1040 aa
117.1 kDa
No >9
SLC4A8-203
ENSP00000405812
ENST00000453097
Q2Y0W8
[Direct mapping] Electroneutral sodium bicarbonate exchanger 1
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005452 [solute:inorganic anion antiporter activity]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0006820 [anion transport]
GO:0008021 [synaptic vesicle]
GO:0008509 [anion transmembrane transporter activity]
GO:0008510 [sodium:bicarbonate symporter activity]
GO:0015081 [sodium ion transmembrane transporter activity]
GO:0015106 [bicarbonate transmembrane transporter activity]
GO:0015108 [chloride transmembrane transporter activity]
GO:0015297 [antiporter activity]
GO:0015701 [bicarbonate transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016324 [apical plasma membrane]
GO:0022857 [transmembrane transporter activity]
GO:0030425 [dendrite]
GO:0030672 [synaptic vesicle membrane]
GO:0031410 [cytoplasmic vesicle]
GO:0032279 [asymmetric synapse]
GO:0032280 [symmetric synapse]
GO:0032809 [neuronal cell body membrane]
GO:0035725 [sodium ion transmembrane transport]
GO:0042391 [regulation of membrane potential]
GO:0042734 [presynaptic membrane]
GO:0043005 [neuron projection]
GO:0043195 [terminal bouton]
GO:0043679 [axon terminus]
GO:0045202 [synapse]
GO:0050801 [ion homeostasis]
GO:0050804 [modulation of chemical synaptic transmission]
GO:0051453 [regulation of intracellular pH]
GO:0055085 [transmembrane transport]
GO:0097386 [glial cell projection]
GO:0097457 [hippocampal mossy fiber]
GO:0098793 [presynapse]
GO:0098978 [glutamatergic synapse]
GO:0140892 []
GO:0150104 [transport across blood-brain barrier]
GO:1902476 [chloride transmembrane transport]
GO:2000302 [positive regulation of synaptic vesicle exocytosis]
Show all
1093 aa
122.9 kDa
No >9
SLC4A8-204
ENSP00000442561
ENST00000514353
Q2Y0W8
[Direct mapping] Electroneutral sodium bicarbonate exchanger 1
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   6TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005452 [solute:inorganic anion antiporter activity]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0006820 [anion transport]
GO:0008021 [synaptic vesicle]
GO:0008509 [anion transmembrane transporter activity]
GO:0008510 [sodium:bicarbonate symporter activity]
GO:0015081 [sodium ion transmembrane transporter activity]
GO:0015106 [bicarbonate transmembrane transporter activity]
GO:0015108 [chloride transmembrane transporter activity]
GO:0015297 [antiporter activity]
GO:0015701 [bicarbonate transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016324 [apical plasma membrane]
GO:0022857 [transmembrane transporter activity]
GO:0030425 [dendrite]
GO:0030672 [synaptic vesicle membrane]
GO:0031410 [cytoplasmic vesicle]
GO:0032279 [asymmetric synapse]
GO:0032280 [symmetric synapse]
GO:0032809 [neuronal cell body membrane]
GO:0035725 [sodium ion transmembrane transport]
GO:0042391 [regulation of membrane potential]
GO:0042734 [presynaptic membrane]
GO:0043005 [neuron projection]
GO:0043195 [terminal bouton]
GO:0043679 [axon terminus]
GO:0045202 [synapse]
GO:0050801 [ion homeostasis]
GO:0050804 [modulation of chemical synaptic transmission]
GO:0051453 [regulation of intracellular pH]
GO:0055085 [transmembrane transport]
GO:0097386 [glial cell projection]
GO:0097457 [hippocampal mossy fiber]
GO:0098793 [presynapse]
GO:0098978 [glutamatergic synapse]
GO:0150104 [transport across blood-brain barrier]
GO:1902476 [chloride transmembrane transport]
GO:2000302 [positive regulation of synaptic vesicle exocytosis]
Show all
747 aa
84 kDa
No 6
SLC4A8-205
ENSP00000441520
ENST00000535225
Q2Y0W8
[Direct mapping] Electroneutral sodium bicarbonate exchanger 1
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005452 [solute:inorganic anion antiporter activity]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0006820 [anion transport]
GO:0008021 [synaptic vesicle]
GO:0008509 [anion transmembrane transporter activity]
GO:0008510 [sodium:bicarbonate symporter activity]
GO:0015081 [sodium ion transmembrane transporter activity]
GO:0015106 [bicarbonate transmembrane transporter activity]
GO:0015108 [chloride transmembrane transporter activity]
GO:0015297 [antiporter activity]
GO:0015701 [bicarbonate transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016324 [apical plasma membrane]
GO:0022857 [transmembrane transporter activity]
GO:0030425 [dendrite]
GO:0030672 [synaptic vesicle membrane]
GO:0031410 [cytoplasmic vesicle]
GO:0032279 [asymmetric synapse]
GO:0032280 [symmetric synapse]
GO:0032809 [neuronal cell body membrane]
GO:0035725 [sodium ion transmembrane transport]
GO:0042391 [regulation of membrane potential]
GO:0042734 [presynaptic membrane]
GO:0043005 [neuron projection]
GO:0043195 [terminal bouton]
GO:0043679 [axon terminus]
GO:0045202 [synapse]
GO:0050801 [ion homeostasis]
GO:0050804 [modulation of chemical synaptic transmission]
GO:0051453 [regulation of intracellular pH]
GO:0055085 [transmembrane transport]
GO:0097386 [glial cell projection]
GO:0097457 [hippocampal mossy fiber]
GO:0098793 [presynapse]
GO:0098978 [glutamatergic synapse]
GO:0150104 [transport across blood-brain barrier]
GO:1902476 [chloride transmembrane transport]
GO:2000302 [positive regulation of synaptic vesicle exocytosis]
Show all
638 aa
71.3 kDa
No 4

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