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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:42.5 nTPM
HPA Brain:57.2 nTPM
GTEx:42.5 nTPM
FANTOM5:59.0 Scaled Tags Per Million
Pig:31.1 nTPM
Mouse:13.2 nTPM
Allen mouse:1.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.2
Sample id Sample description nTPM
Amygdala
nTPM: 57.2
2695 Female, age 67, right hemisphere 72.1
1987 Female, age 91, left hemisphere 63.0
2514 Male, age 75, right hemisphere 62.1
2814 Male, age 76, right hemisphere 44.6
2517 Female, age 94, left hemisphere 43.9
Basal amygdala
nTPM: 37.9
2110 Male, age 80, left hemisphere 45.8
1955 Male, age 76, both hemispheres 43.1
2827 Female, age 67, right hemisphere 39.9
2243 Female, age 91, right hemisphere 35.6
2609 Male, age 75, right hemisphere 32.5
2685 Female, age 94, left hemisphere 30.2
Central amygdala
nTPM: 41.7
2826 Female, age 94, left hemisphere 48.3
2701 Female, age 91, right hemisphere 43.8
1905 Male, age 76, both hemispheres 43.3
2239 Male, age 80, left hemisphere 37.4
2515 Male, age 75, right hemisphere 35.7
Corticomedial amygdala
nTPM: 39.5
2428 Male, age 75, right hemisphere 47.3
2829 Male, age 80, left hemisphere 42.4
2240 Male, age 76, both hemispheres 40.8
2242 Female, age 91, right hemisphere 39.3
2429 Female, age 94, left hemisphere 35.0
2535 Female, age 67, right hemisphere 32.2
Lateral amygdala
nTPM: 42.3
2256 Male, age 80, left hemisphere 56.2
2830 Female, age 67, right hemisphere 47.7
1883 Male, age 76, both hemispheres 43.2
2255 Female, age 91, right hemisphere 39.9
2534 Female, age 94, left hemisphere 39.5
2516 Male, age 75, right hemisphere 27.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

42.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 42.5
Samples: 152

Max nTPM: 156.3
Min nTPM: 9.2
Std nTPM: 27.4
Median nTPM: 33.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 156.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 146.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 142.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 127.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 113.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 102.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 101.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 96.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 92.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 92.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 89.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 88.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 81.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 78.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 78.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 78.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 77.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 77.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 77.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 75.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 74.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 70.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 69.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 69.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 66.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 65.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 64.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 62.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 61.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 60.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 59.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 56.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 56.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 54.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 53.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 52.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 52.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 50.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 49.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 49.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 48.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 48.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 48.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 48.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 47.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 46.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 46.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 46.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 45.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 45.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 45.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 44.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 44.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 44.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 44.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 44.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 43.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 42.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 41.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 41.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 41.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 40.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 40.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 39.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 38.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 38.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 38.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 37.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 36.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 36.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 36.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 35.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 35.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 35.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 35.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 33.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 33.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 32.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 32.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 32.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 32.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 32.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 32.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 31.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 31.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 31.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 31.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 31.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 31.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 30.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 29.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 29.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 29.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 29.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 28.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 28.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 28.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 27.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 27.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 27.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 27.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 27.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 26.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 26.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 26.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 26.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 25.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 25.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 25.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 25.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 25.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 25.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 24.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 23.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 23.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 23.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 23.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 23.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 22.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 22.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 22.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 22.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 22.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 21.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 21.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 20.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 20.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 19.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 19.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 19.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 19.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 19.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 19.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 19.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 19.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 18.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 18.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 17.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 17.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 17.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 17.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 16.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 15.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 14.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 13.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 13.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 12.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 10.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 10.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 9.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 9.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 9.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

59.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 59.0
FF:10151-102I7 76 years, female 59.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

31.1
Pig sample Sample description nTPM
Amygdala
nTPM: 31.1
Samples: 4

Max nTPM: 37.3
Min nTPM: 24.8
Sample A Female 37.3
Sample B Female 34.2
Sample C Male 28.1
Sample D Male 24.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

13.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 13.2
Samples: 4

Max nTPM: 15.3
Min nTPM: 11.0
Sample A Male 11.0
Sample B Male 13.6
Sample C Female 12.8
Sample D Female 15.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.0
75828191 Antisense, RP_060601_01_G03, Mouse strain C57BL/6J (56 days, male) 1.0

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