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CYBA
HPA
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  • CYBA
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

CYBA
Synonyms p22-PHOX
Gene descriptioni

Full gene name according to HGNC.

Cytochrome b-245 alpha chain
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Potential drug targets
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 16
Cytoband q24.2
Chromosome location (bp) 88643275 - 88651083
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

14
Ensembl ENSG00000051523 (version 109)
Entrez gene 1535
HGNC HGNC:2577
UniProt P13498 (UniProt - Evidence at protein level)
neXtProt NX_P13498
GeneCards CYBA
Antibodypedia CYBA antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Critical component of the membrane-bound oxidase of phagocytes that generates superoxide. Associates with NOX3 to form a functional NADPH oxidase constitutively generating superoxide.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Oxidoreductase
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Electron transport, Transport
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Heme, Iron, Metal-binding, NADP
Gene summary (Entrez)i

Useful information about the gene from Entrez

Cytochrome b is comprised of a light chain (alpha) and a heavy chain (beta). This gene encodes the light, alpha subunit which has been proposed as a primary component of the microbicidal oxidase system of phagocytes. Mutations in this gene are associated with autosomal recessive chronic granulomatous disease (CGD), that is characterized by the failure of activated phagocytes to generate superoxide, which is important for the microbicidal activity of these cells. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
CYBA-201
ENSP00000261623
ENST00000261623
P13498
[Direct mapping] Cytochrome b-245 light chain
Show all
Transporters
   Transport Electron Carriers
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Immune system diseases
   Primary immunodeficiency
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001666 [response to hypoxia]
GO:0001725 [stress fiber]
GO:0001938 [positive regulation of endothelial cell proliferation]
GO:0003106 [negative regulation of glomerular filtration by angiotensin]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005768 [endosome]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005794 [Golgi apparatus]
GO:0005886 [plasma membrane]
GO:0005925 [focal adhesion]
GO:0006801 [superoxide metabolic process]
GO:0006954 [inflammatory response]
GO:0009055 [electron transfer activity]
GO:0009410 [response to xenobiotic stimulus]
GO:0014823 [response to activity]
GO:0014895 [smooth muscle hypertrophy]
GO:0016020 [membrane]
GO:0016175 [superoxide-generating NAD(P)H oxidase activity]
GO:0016324 [apical plasma membrane]
GO:0016491 [oxidoreductase activity]
GO:0017004 [cytochrome complex assembly]
GO:0017124 [SH3 domain binding]
GO:0020037 [heme binding]
GO:0022900 [electron transport chain]
GO:0030141 [secretory granule]
GO:0030307 [positive regulation of cell growth]
GO:0030425 [dendrite]
GO:0030670 [phagocytic vesicle membrane]
GO:0031667 [response to nutrient levels]
GO:0032755 [positive regulation of interleukin-6 production]
GO:0032760 [positive regulation of tumor necrosis factor production]
GO:0032930 [positive regulation of superoxide anion generation]
GO:0033864 [positive regulation of NAD(P)H oxidase activity]
GO:0034137 [positive regulation of toll-like receptor 2 signaling pathway]
GO:0035579 [specific granule membrane]
GO:0042554 [superoxide anion generation]
GO:0043020 [NADPH oxidase complex]
GO:0043025 [neuronal cell body]
GO:0045087 [innate immune response]
GO:0045730 [respiratory burst]
GO:0045777 [positive regulation of blood pressure]
GO:0046872 [metal ion binding]
GO:0046982 [protein heterodimerization activity]
GO:0048661 [positive regulation of smooth muscle cell proliferation]
GO:0050665 [hydrogen peroxide biosynthetic process]
GO:0050766 [positive regulation of phagocytosis]
GO:0051279 [regulation of release of sequestered calcium ion into cytosol]
GO:0051649 [establishment of localization in cell]
GO:0070254 [mucus secretion]
GO:0070257 [positive regulation of mucus secretion]
GO:0070555 [response to interleukin-1]
GO:0070821 [tertiary granule membrane]
GO:0071230 [cellular response to amino acid stimulus]
GO:0071260 [cellular response to mechanical stimulus]
GO:0071310 [cellular response to organic substance]
GO:0071333 [cellular response to glucose stimulus]
GO:0071356 [cellular response to tumor necrosis factor]
GO:0071407 [cellular response to organic cyclic compound]
GO:0071480 [cellular response to gamma radiation]
GO:0072593 [reactive oxygen species metabolic process]
GO:0097038 [perinuclear endoplasmic reticulum]
GO:1900426 [positive regulation of defense response to bacterium]
GO:1903428 [positive regulation of reactive oxygen species biosynthetic process]
GO:1904044 [response to aldosterone]
GO:1904385 [cellular response to angiotensin]
GO:1904845 [cellular response to L-glutamine]
Show all
195 aa
21 kDa
No 4
CYBA-204
ENSP00000455537
ENST00000565588
H3BPZ7
[Direct mapping] Cytochrome b-245 light chain
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Human disease related genes
   Immune system diseases
   Primary immunodeficiency
   DeepTMHMM predicted membrane proteins
Show all
GO:0005886 [plasma membrane]
GO:0016020 [membrane]
GO:0020037 [heme binding]
Show all
145 aa
15.6 kDa
No 4
CYBA-205
ENSP00000457060
ENST00000566229
H3BT77
[Direct mapping] Cytochrome b-245 light chain
Show all
   THUMBUP predicted membrane proteins
   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Immune system diseases
   Primary immunodeficiency
Show all
130 aa
14.1 kDa
No 0
CYBA-207
ENSP00000454951
ENST00000567174
H3BNP7
[Direct mapping] Cytochrome b-245 light chain
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Human disease related genes
   Immune system diseases
   Primary immunodeficiency
   DeepTMHMM predicted membrane proteins
Show all
GO:0005886 [plasma membrane]
GO:0016020 [membrane]
GO:0020037 [heme binding]
Show all
210 aa
22.8 kDa
No 4
CYBA-208
ENSP00000455506
ENST00000568278
H3BPX1
[Direct mapping] Cytochrome b-245 light chain
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Human disease related genes
   Immune system diseases
   Primary immunodeficiency
   DeepTMHMM predicted membrane proteins
Show all
GO:0005886 [plasma membrane]
GO:0016020 [membrane]
GO:0020037 [heme binding]
Show all
145 aa
15.9 kDa
No 4
CYBA-209
ENSP00000456079
ENST00000569359
H3BR52
[Direct mapping] Cytochrome b-245 light chain
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Human disease related genes
   Immune system diseases
   Primary immunodeficiency
   DeepTMHMM predicted membrane proteins
Show all
GO:0005886 [plasma membrane]
GO:0016020 [membrane]
GO:0020037 [heme binding]
Show all
128 aa
13.9 kDa
No 4
CYBA-210
ENSP00000512446
ENST00000696156
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Human disease related genes
   Immune system diseases
   Primary immunodeficiency
   DeepTMHMM predicted membrane proteins
Show all
GO:0020037 [heme binding]
Show all
167 aa
17.7 kDa
No 4
CYBA-211
ENSP00000512447
ENST00000696157
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   5TM proteins predicted by MDM
Human disease related genes
   Immune system diseases
   Primary immunodeficiency
   DeepTMHMM predicted membrane proteins
Show all
GO:0020037 [heme binding]
Show all
129 aa
14.3 kDa
No 5
CYBA-212
ENSP00000512448
ENST00000696158
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Human disease related genes
   Immune system diseases
   Primary immunodeficiency
   DeepTMHMM predicted membrane proteins
Show all
GO:0020037 [heme binding]
Show all
153 aa
17.1 kDa
No 4
CYBA-213
ENSP00000512449
ENST00000696159
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Human disease related genes
   Immune system diseases
   Primary immunodeficiency
   DeepTMHMM predicted membrane proteins
Show all
GO:0020037 [heme binding]
Show all
175 aa
18.9 kDa
No 4
CYBA-214
ENSP00000512450
ENST00000696160
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Human disease related genes
   Immune system diseases
   Primary immunodeficiency
   DeepTMHMM predicted membrane proteins
Show all
GO:0020037 [heme binding]
Show all
204 aa
22.1 kDa
No 4
CYBA-215
ENSP00000512451
ENST00000696161
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Human disease related genes
   Immune system diseases
   Primary immunodeficiency
   DeepTMHMM predicted membrane proteins
Show all
GO:0020037 [heme binding]
Show all
254 aa
27.2 kDa
No 2
CYBA-216
ENSP00000512452
ENST00000696162
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Human disease related genes
   Immune system diseases
   Primary immunodeficiency
   DeepTMHMM predicted membrane proteins
Show all
GO:0020037 [heme binding]
Show all
176 aa
19.6 kDa
No 4
CYBA-217
ENSP00000512453
ENST00000696163
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Human disease related genes
   Immune system diseases
   Primary immunodeficiency
   DeepTMHMM predicted membrane proteins
Show all
GO:0020037 [heme binding]
Show all
178 aa
19.1 kDa
No 4

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