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TISSUE AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:291.6 nTPM
HPA Brain:232.7 nTPM
GTEx:291.6 nTPM
FANTOM5:271.4 Scaled Tags Per Million
Pig:352.4 nTPM

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

232.7
Sample id Sample description nTPM
Amygdala
nTPM: 121.2
1987 Female, age 91, left hemisphere 297.8
2517 Female, age 94, left hemisphere 158.3
2514 Male, age 75, right hemisphere 108.1
2695 Female, age 67, right hemisphere 28.1
2814 Male, age 76, right hemisphere 13.9
Basal amygdala
nTPM: 161.1
2243 Female, age 91, right hemisphere 459.1
2110 Male, age 80, left hemisphere 165.3
2685 Female, age 94, left hemisphere 111.4
2827 Female, age 67, right hemisphere 95.0
1955 Male, age 76, both hemispheres 71.4
2609 Male, age 75, right hemisphere 64.2
Central amygdala
nTPM: 115.3
2701 Female, age 91, right hemisphere 212.4
2239 Male, age 80, left hemisphere 210.0
2515 Male, age 75, right hemisphere 76.0
2826 Female, age 94, left hemisphere 63.9
1905 Male, age 76, both hemispheres 14.2
Corticomedial amygdala
nTPM: 232.7
2242 Female, age 91, right hemisphere 589.0
2829 Male, age 80, left hemisphere 397.0
2535 Female, age 67, right hemisphere 162.0
2429 Female, age 94, left hemisphere 100.6
2240 Male, age 76, both hemispheres 81.2
2428 Male, age 75, right hemisphere 66.1
Lateral amygdala
nTPM: 98.8
2255 Female, age 91, right hemisphere 211.4
1883 Male, age 76, both hemispheres 124.7
2830 Female, age 67, right hemisphere 80.7
2256 Male, age 80, left hemisphere 75.7
2534 Female, age 94, left hemisphere 53.3
2516 Male, age 75, right hemisphere 46.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

291.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 291.6
Samples: 152

Max nTPM: 1067.8
Min nTPM: 8.3
Std nTPM: 212.8
Median nTPM: 240.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1067.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1056.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 907.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 893.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 842.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 776.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 758.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 701.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 688.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 662.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 647.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 646.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 642.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 621.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 577.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 542.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 524.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 520.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 514.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 510.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 504.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 503.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 488.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 476.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 474.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 472.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 471.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 470.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 453.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 452.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 439.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 438.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 437.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 425.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 414.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 412.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 411.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 411.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 406.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 404.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 394.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 391.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 387.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 387.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 386.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 385.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 384.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 384.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 375.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 364.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 360.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 354.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 345.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 337.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 331.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 321.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 317.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 316.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 308.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 301.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 284.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 280.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 279.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 275.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 274.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 274.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 263.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 261.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 259.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 256.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 250.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 248.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 247.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 244.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 243.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 241.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 240.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 238.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 233.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 229.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 226.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 223.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 209.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 204.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 204.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 202.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 202.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 199.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 199.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 197.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 194.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 192.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 184.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 183.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 182.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 182.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 181.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 179.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 176.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 173.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 170.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 170.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 166.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 162.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 162.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 162.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 157.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 156.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 151.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 149.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 149.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 141.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 140.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 137.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 132.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 131.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 129.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 129.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 128.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 124.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 119.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 116.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 112.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 107.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 105.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 103.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 91.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 89.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 86.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 81.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 81.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 78.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 77.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 76.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 69.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 68.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 66.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 66.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 63.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 57.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 57.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 54.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 52.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 48.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 44.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 33.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 31.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 24.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 24.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 21.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 20.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 8.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

271.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 271.4
FF:10151-102I7 76 years, female 271.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

352.4
Pig sample Sample description nTPM
Amygdala
nTPM: 352.4
Samples: 4

Max nTPM: 523.7
Min nTPM: 210.4
Sample A Female 523.7
Sample B Female 210.4
Sample C Male 388.2
Sample D Male 287.2

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