MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.8 nTPM
HPA Brain:64.5 nTPM
GTEx:5.8 nTPM
FANTOM5:10.2 Scaled Tags Per Million
Pig:16.6 nTPM
Mouse:12.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 64.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.4
2828 Female, age 72, unknown 32.0
2586 Male, age 75, left hemisphere 29.8
1870 Female, age 42, unknown 26.2
1827 Male, age 72, unknown 23.9
2666 Male, age 74, left hemisphere 14.1
1833 Male, age 53, unknown 13.4
2411 Female, age 72, unknown 12.9
1830 Male, age 51, unknown 11.7
2219 Male, age 76, both hemispheres 10.2
2019 Male, age 18, unknown 10.1
Dorsal raphe nucleus
nTPM: 29.9
2016 Female, age 72, unknown 53.6
2298 Female, age 72, unknown 37.4
1828 Male, age 53, unknown 30.9
2047 Male, age 72, unknown 16.6
2750 Male, age 76, both hemispheres 10.9
Inferior colliculus
nTPM: 19.5
2849 Male, age 72, unknown 25.1
1848 Female, age 42, unknown 22.4
2097 Female, age 72, unknown 18.7
1890 Male, age 53, unknown 11.9
Median raphe nucleus
nTPM: 13.5
2220 Male, age 76, midline 13.5
Periaquaductal grey, anterior
nTPM: 33.2
1795 Male, age 51, unknown 55.4
2502 Female, age 75, unknown 27.1
1947 Male, age 18, unknown 17.0
Periaquaductal grey, dorsal
nTPM: 42.7
2850 Male, age 76, both hemispheres 53.6
1840 Male, age 53, unknown 48.8
1831 Male, age 72, unknown 41.9
2464 Female, age 72, unknown 26.3
Periaquaductal grey, lateral
nTPM: 64.5
2053 Male, age 18, unknown 79.1
2140 Male, age 76, both hemispheres 57.9
2272 Male, age 74, both hemispheres 56.6
Pretectal area
nTPM: 34.0
2273 Male, age 74, both hemispheres 80.1
2224 Female, age 72, unknown 41.6
2316 Male, age 76, right hemisphere 39.7
2667 Female, age 75, unknown 39.3
2825 Male, age 18, unknown 36.0
1944 Female, age 72, unknown 31.1
2407 Male, age 75, both hemispheres 27.0
1816 Male, age 51, unknown 26.3
1815 Male, age 53, unknown 24.5
1817 Female, age 42, unknown 15.6
2007 Male, age 72, unknown 12.3
Red nucleus
nTPM: 11.6
2725 Female, age 75, unknown 18.9
2227 Male, age 72, unknown 16.9
2769 Male, age 72, unknown 16.7
2503 Female, age 72, unknown 16.6
2584 Male, age 75, left hemisphere 10.3
2823 Male, age 76, right hemisphere 10.2
1821 Female, age 72, unknown 9.9
1954 Female, age 42, unknown 9.2
2785 Male, age 18, unknown 8.5
2588 Male, age 74, left hemisphere 8.1
1904 Male, age 53, unknown 7.3
1865 Male, age 51, unknown 6.5
Substantia nigra
nTPM: 15.2
2699 Male, age 18, unknown 26.4
1851 Male, age 51, unknown 17.8
2590 Female, age 75, unknown 17.0
2583 Male, age 75, right hemisphere 15.9
2409 Female, age 72, unknown 15.1
1916 Female, age 42, unknown 14.3
1941 Male, age 53, unknown 14.2
1889 Female, age 72, unknown 13.9
2241 Male, age 72, unknown 9.1
2665 Male, age 74, both hemispheres 8.7
Superior colliculus
nTPM: 30.7
2664 Male, age 75, both hemispheres 41.9
1796 Male, age 53, unknown 40.8
1995 Male, age 72, unknown 39.3
2261 Male, age 18, unknown 38.7
1913 Female, age 42, unknown 34.3
1839 Male, age 51, unknown 30.9
2587 Male, age 74, left hemisphere 29.2
2087 Female, age 72, unknown 26.8
1895 Male, age 76, right hemisphere 13.6
2668 Female, age 75, unknown 12.0
Ventral tegmental area
nTPM: 22.5
2021 Male, age 53, unknown 38.0
1915 Female, age 42, unknown 26.5
1942 Male, age 51, unknown 22.7
2218 Male, age 76, both hemispheres 16.4
2410 Female, age 72, unknown 16.1
2223 Female, age 72, unknown 15.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 5.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.8
Samples: 139

Max nTPM: 28.9
Min nTPM: 0.3
Std nTPM: 4.4
Median nTPM: 4.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 28.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 23.7
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 20.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 18.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 16.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 16.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 14.5
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 14.5
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 12.9
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 12.1
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 11.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 10.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.2
FF:10158-103A5 76 years, female 10.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 16.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.6
Samples: 4

Max nTPM: 22.4
Min nTPM: 10.5
Sample A Female 21.6
Sample B Female 10.5
Sample C Male 22.4
Sample D Male 11.7
Midbrain
nTPM: 10.9
Samples: 4

Max nTPM: 16.3
Min nTPM: 8.3
Sample A Female 8.3
Sample B Female 16.3
Sample C Male 10.3
Sample D Male 8.7
Periaqueductal gray
nTPM: 14.7
Samples: 3

Max nTPM: 17.4
Min nTPM: 12.2
Sample B Female 12.2
Sample C Male 17.4
Sample D Male 14.5
Superior colliculi
nTPM: 7.7
Samples: 4

Max nTPM: 11.9
Min nTPM: 2.6
Sample A Female 11.9
Sample B Female 2.6
Sample C Male 6.4
Sample D Male 9.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 12.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.4
Samples: 4

Max nTPM: 14.2
Min nTPM: 11.5
Sample A Male 14.2
Sample B Male 11.5
Sample C Female 11.7
Sample D Female 12.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71612165 Antisense, RP_050927_02_B12, Mouse strain C57BL/6J (56 days, male) 0.1
73732144 Antisense, RP_050927_02_B12, Mouse strain C57BL/6J (56 days, male) 0.1

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