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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
300.7
nTPM
FANTOM5:
372.6
Scaled Tags Per Million
Pig:
172.9
nTPM
Allen mouse:
1.2
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
300.7
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 257.0
2301
Female, age 85, both hemispheres
274.7
2188
Female, age 91, both hemispheres
262.4
1984
Male, age 76, both hemispheres
252.7
2090
Male, age 80, both hemispheres
238.2
Dorsal cochlear nucleus nTPM: 247.3
2802
Male, age 74, right hemisphere
260.7
2187
Female, age 91, both hemispheres
257.0
2370
Male, age 61, both hemispheres
241.8
2058
Male, age 76, both hemispheres
239.6
2378
Male, age 80, both hemispheres
237.5
Dorsal tegmental nucleus nTPM: 218.9
2083
Male, age 80, both hemispheres
247.6
2326
Male, age 74, both hemispheres
236.9
1936
Male, age 76, left hemisphere
215.4
2358
Male, age 61, both hemispheres
175.6
Dorsolateral tegmental area nTPM: 223.6
2654
Male, age 80, both hemispheres
259.2
2751
Female, age 85, both hemispheres
256.8
2141
Male, age 76, both hemispheres
226.0
2360
Male, age 74, both hemispheres
217.4
2337
Male, age 61, both hemispheres
158.4
Kolliker-Fuse nucleus nTPM: 252.3
2793
Female, age 91, left hemisphere
302.9
2163
Male, age 80, both hemispheres
250.2
2315
Male, age 76, right hemisphere
203.8
Lateral lemniscal nuclei nTPM: 298.3
2036
Male, age 80, both hemispheres
355.8
2169
Male, age 76, both hemispheres
310.4
2320
Female, age 91, left hemisphere
298.2
2746
Female, age 85, left hemisphere
268.4
2453
Male, age 74, right hemisphere
258.8
Lateral parabrachial nucleus nTPM: 260.5
2792
Male, age 76, both hemispheres
273.2
2139
Female, age 85, right hemisphere
264.8
2013
Male, age 80, both hemispheres
259.2
2790
Male, age 61, both hemispheres
245.0
Lateral vestibular nucleus nTPM: 245.0
2184
Male, age 76, both hemispheres
252.4
2311
Male, age 80, both hemispheres
237.6
Locus coeruleus nTPM: 266.0
2014
Male, age 55, unknown
307.1
2317
Female, age 72, unknown
281.5
2788
Male, age 74, unknown
261.4
2123
Female, age 91, both hemispheres
259.3
2162
Male, age 80, both hemispheres
256.8
2720
Male, age 74, both hemispheres
253.6
1980
Male, age 76, both hemispheres
242.4
Medial parabrachial nucleus nTPM: 249.3
2854
Male, age 80, both hemispheres
262.9
2170
Female, age 91, both hemispheres
260.4
2463
Female, age 85, right hemisphere
251.6
2156
Male, age 61, both hemispheres
236.6
2786
Male, age 76, both hemispheres
235.1
Medial periolivary nuclei nTPM: 276.6
2063
Male, age 76, both hemispheres
306.7
2171
Female, age 85, both hemispheres
301.2
2458
Female, age 91, both hemispheres
265.8
2791
Male, age 74, right hemisphere
256.0
2081
Male, age 80, both hemispheres
253.3
Motor facial nucleus nTPM: 283.3
2062
Male, age 76, both hemispheres
306.3
2327
Male, age 80, both hemispheres
299.3
2795
Female, age 91, both hemispheres
289.2
2126
Male, age 61, both hemispheres
277.1
2697
Female, age 85, both hemispheres
269.3
2365
Male, age 74, right hemisphere
258.6
Motor trigeminal nucleus nTPM: 253.8
2079
Male, age 80, both hemispheres
270.8
2321
Female, age 91, both hemispheres
266.8
2560
Male, age 74, both hemispheres
253.3
2309
Male, age 76, both hemispheres
248.0
2335
Male, age 61, both hemispheres
229.9
Nuclei of the trapezoid body nTPM: 300.7
2159
Male, age 61, both hemispheres
357.8
2735
Female, age 85, both hemispheres
296.2
2368
Female, age 91, both hemispheres
293.1
2166
Male, age 80, both hemispheres
285.0
1983
Male, age 76, both hemispheres
271.6
Nucleus raphe magnus nTPM: 292.4
2160
Male, age 61, both hemispheres
355.2
2328
Male, age 80, both hemispheres
296.8
2172
Female, age 85, both hemispheres
293.2
2459
Female, age 91, both hemispheres
284.2
2051
Male, age 76, both hemispheres
264.8
2455
Male, age 74, both hemispheres
259.9
Paramedian reticular nucleus nTPM: 267.5
2313
Male, age 61, both hemispheres
286.3
2050
Female, age 85, both hemispheres
283.4
2057
Male, age 80, both hemispheres
265.4
2052
Male, age 76, both hemispheres
234.7
Pedunculopontine tegmental nucleus nTPM: 232.3
2334
Male, age 80, both hemispheres
257.6
1921
Female, age 85, both hemispheres
248.0
2338
Male, age 61, both hemispheres
191.4
Pontine nuclei nTPM: 296.7
2727
Male, age 61, right hemisphere
365.9
1863
Male, age 55, unknown
343.3
2109
Female, age 72, unknown
301.7
1968
Male, age 76, left hemisphere
287.4
2454
Male, age 74, left hemisphere
281.3
2787
Female, age 85, both hemispheres
278.1
2319
Female, age 91, both hemispheres
273.3
2115
Male, age 80, left hemisphere
242.4
Pontine raphe nucleus nTPM: 250.6
2122
Female, age 85, midline
269.1
2853
Male, age 76, midline
232.2
Posteroventral cochlear nucleus nTPM: 250.2
2070
Male, age 76, both hemispheres
255.0
2371
Male, age 61, both hemispheres
253.3
2135
Female, age 91, both hemispheres
251.0
2752
Female, age 85, both hemispheres
249.7
2341
Male, age 80, both hemispheres
242.1
Principal sensory trigeminal nucleus nTPM: 283.2
2158
Male, age 61, both hemispheres
333.8
2008
Male, age 80, left hemisphere
279.1
2367
Female, age 91, left hemisphere
274.6
2324
Male, age 76, both hemispheres
245.4
Reticular pontine nucleus, caudal nTPM: 274.0
2332
Male, age 80, right hemisphere
307.9
2092
Male, age 76, both hemispheres
278.5
2457
Female, age 91, both hemispheres
262.3
2559
Male, age 74, both hemispheres
247.2
Reticular pontine nucleus, oral nTPM: 266.1
2366
Female, age 91, both hemispheres
289.6
2012
Female, age 85, both hemispheres
281.5
2361
Male, age 74, both hemispheres
271.4
1939
Male, age 80, both hemispheres
251.1
2167
Male, age 76, both hemispheres
236.9
Reticulotegmental nucleus nTPM: 266.6
2322
Female, age 91, both hemispheres
278.8
2333
Male, age 80, both hemispheres
273.3
2325
Male, age 76, both hemispheres
258.6
2452
Male, age 74, both hemispheres
255.7
Spinal trigeminal nucleus, oral nTPM: 236.9
2164
Male, age 80, both hemispheres
243.7
2737
Female, age 85, both hemispheres
235.3
1978
Male, age 76, both hemispheres
231.7
Subcoeruleus area nTPM: 259.0
2089
Male, age 76, left hemisphere
283.7
2369
Female, age 85, left hemisphere
264.6
1958
Male, age 80, both hemispheres
260.6
2323
Female, age 91, left hemisphere
252.7
2451
Male, age 74, both hemispheres
233.1
Superior olive nTPM: 283.5
2329
Male, age 80, right hemisphere
302.9
1875
Female, age 85, both hemispheres
300.0
2020
Male, age 76, both hemispheres
294.8
2561
Female, age 91, both hemispheres
266.5
2364
Male, age 74, right hemisphere
253.2
Ventral periolivary nuclei nTPM: 292.9
2023
Male, age 76, both hemispheres
307.6
2130
Female, age 85, both hemispheres
300.7
2165
Male, age 80, both hemispheres
298.3
2794
Female, age 91, left hemisphere
264.9
Ventrolateral tegmental area, A5 NE cell group nTPM: 261.4
1959
Male, age 76, both hemispheres
282.2
2456
Female, age 91, both hemispheres
276.0
2161
Male, age 80, both hemispheres
267.7
2840
Female, age 85, both hemispheres
255.0
2449
Male, age 74, both hemispheres
251.4
2359
Male, age 61, both hemispheres
235.8
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
172.9
Pig sample
Sample description
nTPM
Pons nTPM: 172.9
Samples: 4
Max nTPM: 184.0
Min nTPM: 164.3
Sample A
Female
176.0
Sample B
Female
164.3
Sample C
Male
167.3
Sample D
Male
184.0
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
