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GALC
HPA
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  • GALC
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

GALC
Synonyms
Gene descriptioni

Full gene name according to HGNC.

Galactosylceramidase
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Enzymes
Human disease related genes
Metabolic proteins
Plasma proteins
Potential drug targets
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 14
Cytoband q31.3
Chromosome location (bp) 87837820 - 87993665
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

5
Ensembl ENSG00000054983 (version 109)
Entrez gene 2581
HGNC HGNC:4115
UniProt P54803 (UniProt - Evidence at protein level)
neXtProt NX_P54803
GeneCards GALC
Antibodypedia GALC antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Hydrolyzes the galactose ester bonds of glycolipids such as galactosylceramide and galactosylsphingosine 1, 2. Enzyme with very low activity responsible for the lysosomal catabolism of galactosylceramide, a major lipid in myelin, kidney and epithelial cells of small intestine and colon 3, 4.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Glycosidase, Hydrolase
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Lipid degradation, Lipid metabolism, Sphingolipid metabolism
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a lysosomal protein which hydrolyzes the galactose ester bonds of galactosylceramide, galactosylsphingosine, lactosylceramide, and monogalactosyldiglyceride. Mutations in this gene have been associated with Krabbe disease, also known as globoid cell leukodystrophy. Alternate transcriptional splice variants, encoding different isoforms, have been characterized. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
GALC-201
ENSP00000261304
ENST00000261304
P54803
[Direct mapping] Galactocerebrosidase
Show all
A0A0A0MQV0
[Target identity:100%; Query identity:100%] Galactocerebrosidase
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Metabolic proteins
   MEMSAT3 predicted membrane proteins
   THUMBUP predicted membrane proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
Predicted intracellular proteins
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of lipid/glycolipid metabolism
   Lysosomal storage diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004336 [galactosylceramidase activity]
GO:0005764 [lysosome]
GO:0006629 [lipid metabolic process]
GO:0006665 [sphingolipid metabolic process]
GO:0006683 [galactosylceramide catabolic process]
GO:0006687 [glycosphingolipid metabolic process]
GO:0008152 [metabolic process]
GO:0016042 [lipid catabolic process]
GO:0016787 [hydrolase activity]
GO:0016798 [hydrolase activity, acting on glycosyl bonds]
GO:0042552 [myelination]
GO:0043202 [lysosomal lumen]
Show all
685 aa
77.1 kDa
Yes 0
GALC-202
ENSP00000377198
ENST00000393568
P54803
[Direct mapping] Galactocerebrosidase
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Metabolic proteins
   MEMSAT3 predicted membrane proteins
   THUMBUP predicted membrane proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
Predicted intracellular proteins
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of lipid/glycolipid metabolism
   Lysosomal storage diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004336 [galactosylceramidase activity]
GO:0005764 [lysosome]
GO:0006629 [lipid metabolic process]
GO:0006665 [sphingolipid metabolic process]
GO:0006683 [galactosylceramide catabolic process]
GO:0006687 [glycosphingolipid metabolic process]
GO:0008152 [metabolic process]
GO:0016042 [lipid catabolic process]
GO:0016787 [hydrolase activity]
GO:0016798 [hydrolase activity, acting on glycosyl bonds]
GO:0043202 [lysosomal lumen]
Show all
662 aa
74.3 kDa
Yes 0
GALC-203
ENSP00000377199
ENST00000393569
P54803
[Direct mapping] Galactocerebrosidase
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of lipid/glycolipid metabolism
   Lysosomal storage diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004336 [galactosylceramidase activity]
GO:0005764 [lysosome]
GO:0006629 [lipid metabolic process]
GO:0006665 [sphingolipid metabolic process]
GO:0006683 [galactosylceramide catabolic process]
GO:0006687 [glycosphingolipid metabolic process]
GO:0008152 [metabolic process]
GO:0016042 [lipid catabolic process]
GO:0016787 [hydrolase activity]
GO:0016798 [hydrolase activity, acting on glycosyl bonds]
GO:0043202 [lysosomal lumen]
Show all
659 aa
74.8 kDa
No 0
GALC-206
ENSP00000437513
ENST00000544807
P54803
[Direct mapping] Galactocerebrosidase
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of lipid/glycolipid metabolism
   Lysosomal storage diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004336 [galactosylceramidase activity]
GO:0005764 [lysosome]
GO:0006629 [lipid metabolic process]
GO:0006665 [sphingolipid metabolic process]
GO:0006683 [galactosylceramide catabolic process]
GO:0006687 [glycosphingolipid metabolic process]
GO:0008152 [metabolic process]
GO:0016042 [lipid catabolic process]
GO:0016787 [hydrolase activity]
GO:0016798 [hydrolase activity, acting on glycosyl bonds]
GO:0043202 [lysosomal lumen]
Show all
589 aa
67.2 kDa
No 0
GALC-216
ENSP00000480649
ENST00000622264
A0A087WX10
[Direct mapping] Galactocerebrosidase
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of lipid/glycolipid metabolism
   Lysosomal storage diseases
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004336 [galactosylceramidase activity]
GO:0004553 [hydrolase activity, hydrolyzing O-glycosyl compounds]
GO:0006629 [lipid metabolic process]
GO:0006665 [sphingolipid metabolic process]
GO:0006683 [galactosylceramide catabolic process]
GO:0008152 [metabolic process]
GO:0016042 [lipid catabolic process]
GO:0016787 [hydrolase activity]
GO:0016798 [hydrolase activity, acting on glycosyl bonds]
Show all
404 aa
45.2 kDa
Yes 1

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