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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:53.5 nTPM
HPA Brain:284.7 nTPM
GTEx:53.5 nTPM
FANTOM5:294.8 Scaled Tags Per Million
Pig:137.0 nTPM
Mouse:254.2 nTPM
Allen mouse:21.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

284.7
Sample id Sample description nTPM
Amygdala
nTPM: 231.8
2814 Male, age 76, right hemisphere 347.4
2517 Female, age 94, left hemisphere 256.9
2514 Male, age 75, right hemisphere 197.1
1987 Female, age 91, left hemisphere 193.5
2695 Female, age 67, right hemisphere 164.2
Basal amygdala
nTPM: 284.7
2243 Female, age 91, right hemisphere 375.4
2685 Female, age 94, left hemisphere 294.0
2110 Male, age 80, left hemisphere 291.7
1955 Male, age 76, both hemispheres 291.5
2609 Male, age 75, right hemisphere 273.6
2827 Female, age 67, right hemisphere 181.7
Central amygdala
nTPM: 240.9
1905 Male, age 76, both hemispheres 351.4
2239 Male, age 80, left hemisphere 269.7
2826 Female, age 94, left hemisphere 228.4
2515 Male, age 75, right hemisphere 190.4
2701 Female, age 91, right hemisphere 164.5
Corticomedial amygdala
nTPM: 279.2
2829 Male, age 80, left hemisphere 331.8
2242 Female, age 91, right hemisphere 319.5
2240 Male, age 76, both hemispheres 267.7
2429 Female, age 94, left hemisphere 265.3
2535 Female, age 67, right hemisphere 249.1
2428 Male, age 75, right hemisphere 241.8
Lateral amygdala
nTPM: 220.4
1883 Male, age 76, both hemispheres 316.8
2534 Female, age 94, left hemisphere 256.3
2516 Male, age 75, right hemisphere 214.0
2255 Female, age 91, right hemisphere 205.1
2256 Male, age 80, left hemisphere 195.3
2830 Female, age 67, right hemisphere 135.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

53.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 53.5
Samples: 152

Max nTPM: 132.0
Min nTPM: 5.2
Std nTPM: 24.5
Median nTPM: 49.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 132.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 129.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 107.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 107.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 103.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 102.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 102.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 98.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 94.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 91.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 90.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 89.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 88.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 88.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 88.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 87.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 87.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 85.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 84.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 82.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 82.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 82.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 81.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 81.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 79.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 79.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 78.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 78.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 77.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 76.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 75.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 74.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 74.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 74.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 72.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 72.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 72.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 71.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 70.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 69.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 68.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 68.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 68.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 68.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 67.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 67.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 66.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 65.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 65.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 65.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 64.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 62.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 62.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 61.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 60.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 60.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 60.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 59.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 59.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 58.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 55.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 54.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 53.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 53.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 53.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 53.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 52.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 52.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 52.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 52.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 51.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 51.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 51.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 50.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 50.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 49.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 49.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 48.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 47.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 47.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 47.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 46.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 45.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 45.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 45.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 44.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 44.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 44.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 43.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 43.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 43.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 42.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 41.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 41.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 41.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 40.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 39.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 39.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 39.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 39.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 39.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 38.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 37.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 37.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 37.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 37.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 36.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 36.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 35.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 35.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 34.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 34.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 34.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 33.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 33.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 33.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 32.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 32.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 32.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 31.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 31.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 31.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 31.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 30.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 30.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 30.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 29.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 29.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 29.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 29.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 28.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 28.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 27.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 27.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 26.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 26.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 26.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 26.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 25.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 23.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 22.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 22.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 22.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 22.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 21.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 21.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 20.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 19.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 15.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 13.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 12.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 5.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

294.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 294.8
FF:10151-102I7 76 years, female 294.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.0
Pig sample Sample description nTPM
Amygdala
nTPM: 137.0
Samples: 4

Max nTPM: 181.5
Min nTPM: 96.0
Sample A Female 181.5
Sample B Female 96.0
Sample C Male 125.8
Sample D Male 144.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

254.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 254.2
Samples: 4

Max nTPM: 272.7
Min nTPM: 239.7
Sample A Male 258.7
Sample B Male 245.5
Sample C Female 272.7
Sample D Female 239.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

21.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.6
74357791 Antisense, RP_051219_04_A10, Mouse strain C57BL/6J (56 days, male) 23.6
68919922 Antisense, RP_050301_02_G08, Mouse strain C57BL/6J (56 days, male) 19.7

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