MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:118.8 nTPM
HPA Brain:123.0 nTPM
GTEx:118.8 nTPM
FANTOM5:104.7 Scaled Tags Per Million
Pig:122.7 nTPM
Mouse:97.2 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 123.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 90.8
2411 Female, age 72, unknown 126.2
2219 Male, age 76, both hemispheres 103.5
1870 Female, age 42, unknown 99.4
1827 Male, age 72, unknown 97.3
2666 Male, age 74, left hemisphere 93.7
1833 Male, age 53, unknown 92.9
1830 Male, age 51, unknown 82.6
2828 Female, age 72, unknown 75.3
2586 Male, age 75, left hemisphere 68.5
2019 Male, age 18, unknown 68.4
Dorsal raphe nucleus
nTPM: 111.4
2298 Female, age 72, unknown 137.5
2047 Male, age 72, unknown 126.3
2750 Male, age 76, both hemispheres 110.7
1828 Male, age 53, unknown 97.7
2016 Female, age 72, unknown 84.6
Inferior colliculus
nTPM: 76.8
2097 Female, age 72, unknown 80.0
2849 Male, age 72, unknown 79.9
1848 Female, age 42, unknown 79.1
1890 Male, age 53, unknown 68.2
Median raphe nucleus
nTPM: 123.0
2220 Male, age 76, midline 123.0
Periaquaductal grey, anterior
nTPM: 86.2
1947 Male, age 18, unknown 95.6
1795 Male, age 51, unknown 89.2
2502 Female, age 75, unknown 73.7
Periaquaductal grey, dorsal
nTPM: 85.8
1840 Male, age 53, unknown 105.2
2464 Female, age 72, unknown 85.2
2850 Male, age 76, both hemispheres 83.6
1831 Male, age 72, unknown 69.1
Periaquaductal grey, lateral
nTPM: 77.5
2053 Male, age 18, unknown 81.5
2272 Male, age 74, both hemispheres 79.2
2140 Male, age 76, both hemispheres 71.9
Pretectal area
nTPM: 83.4
2224 Female, age 72, unknown 111.2
2825 Male, age 18, unknown 91.9
1816 Male, age 51, unknown 86.3
2273 Male, age 74, both hemispheres 83.9
2667 Female, age 75, unknown 82.8
2007 Male, age 72, unknown 82.6
1944 Female, age 72, unknown 82.3
1817 Female, age 42, unknown 82.2
1815 Male, age 53, unknown 79.3
2316 Male, age 76, right hemisphere 68.6
2407 Male, age 75, both hemispheres 66.5
Red nucleus
nTPM: 67.9
1821 Female, age 72, unknown 84.5
2725 Female, age 75, unknown 81.4
2584 Male, age 75, left hemisphere 75.7
2588 Male, age 74, left hemisphere 70.1
1954 Female, age 42, unknown 66.3
2769 Male, age 72, unknown 65.7
2227 Male, age 72, unknown 65.0
2503 Female, age 72, unknown 64.6
2785 Male, age 18, unknown 61.8
1904 Male, age 53, unknown 61.3
1865 Male, age 51, unknown 60.1
2823 Male, age 76, right hemisphere 58.6
Substantia nigra
nTPM: 113.3
1916 Female, age 42, unknown 165.6
2241 Male, age 72, unknown 153.2
1851 Male, age 51, unknown 127.8
1941 Male, age 53, unknown 119.6
2699 Male, age 18, unknown 115.2
2409 Female, age 72, unknown 110.5
1889 Female, age 72, unknown 97.9
2665 Male, age 74, both hemispheres 85.1
2590 Female, age 75, unknown 79.5
2583 Male, age 75, right hemisphere 78.9
Superior colliculus
nTPM: 79.2
2668 Female, age 75, unknown 104.3
1796 Male, age 53, unknown 89.0
1839 Male, age 51, unknown 86.0
1895 Male, age 76, right hemisphere 83.2
2261 Male, age 18, unknown 81.6
2587 Male, age 74, left hemisphere 78.5
2087 Female, age 72, unknown 75.5
1913 Female, age 42, unknown 70.0
2664 Male, age 75, both hemispheres 67.9
1995 Male, age 72, unknown 56.1
Ventral tegmental area
nTPM: 108.4
1915 Female, age 42, unknown 127.0
2410 Female, age 72, unknown 121.2
2218 Male, age 76, both hemispheres 109.9
2223 Female, age 72, unknown 100.7
2021 Male, age 53, unknown 97.7
1942 Male, age 51, unknown 94.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 118.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 118.8
Samples: 139

Max nTPM: 267.0
Min nTPM: 54.6
Std nTPM: 45.2
Median nTPM: 110.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 267.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 261.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 249.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 248.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 228.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 224.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 213.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 207.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 203.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 202.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 194.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 104.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 104.7
FF:10158-103A5 76 years, female 104.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 122.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 122.7
Samples: 4

Max nTPM: 183.3
Min nTPM: 67.4
Sample A Female 183.3
Sample B Female 100.9
Sample C Male 139.2
Sample D Male 67.4
Midbrain
nTPM: 107.4
Samples: 4

Max nTPM: 111.4
Min nTPM: 98.2
Sample A Female 111.2
Sample B Female 108.6
Sample C Male 111.4
Sample D Male 98.2
Periaqueductal gray
nTPM: 100.3
Samples: 3

Max nTPM: 121.5
Min nTPM: 88.3
Sample B Female 91.1
Sample C Male 121.5
Sample D Male 88.3
Superior colliculi
nTPM: 97.8
Samples: 4

Max nTPM: 121.2
Min nTPM: 63.6
Sample A Female 121.2
Sample B Female 63.6
Sample C Male 111.2
Sample D Male 95.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 97.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 97.2
Samples: 4

Max nTPM: 102.0
Min nTPM: 90.8
Sample A Male 99.3
Sample B Male 102.0
Sample C Female 90.8
Sample D Female 96.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
71232582 Antisense, RP_050412_01_E11, Mouse strain C57BL/6J (56 days, male) 1.7

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