BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.3 nTPM
HPA Brain:41.1 nTPM
GTEx:36.3 nTPM
FANTOM5:116.0 Scaled Tags Per Million
Pig:54.4 nTPM
Mouse:48.5 nTPM
Allen mouse:2.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 41.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 36.2
1854 Male, age 80, left hemisphere 43.9
1857 Female, age 85, left hemisphere 43.1
2481 Female, age 94, left hemisphere 41.6
2290 Female, age 72, unknown 36.2
2288 Male, age 75, left hemisphere 34.2
2846 Female, age 79, unknown 33.2
2289 Male, age 61, right hemisphere 29.5
1781 Male, age 74, unknown 28.0
Globus pallidus, externus
nTPM: 41.1
1996 Male, age 80, right hemisphere 53.0
2772 Female, age 79, unknown 46.4
2395 Male, age 75, both hemispheres 36.4
2646 Male, age 61, right hemisphere 36.3
2567 Female, age 72, unknown 33.5
Globus pallidus, internus
nTPM: 38.5
2483 Female, age 94, right hemisphere 45.3
2037 Male, age 80, right hemisphere 44.6
1818 Male, age 74, unknown 41.8
2287 Male, age 75, right hemisphere 39.8
2111 Female, age 85, right hemisphere 35.3
2778 Female, age 91, both hemispheres 33.3
2566 Female, age 72, unknown 29.7
Nucleus accumbens
nTPM: 33.7
1806 Female, age 85, left hemisphere 37.3
2391 Female, age 94, left hemisphere 37.0
2286 Male, age 75, left hemisphere 36.2
2698 Female, age 72, unknown 35.3
2732 Male, age 80, right hemisphere 35.3
1856 Female, age 91, right hemisphere 33.3
1783 Male, age 74, unknown 30.8
2824 Male, age 61, right hemisphere 24.7
Nucleus basalis of Meynert
nTPM: 33.0
2569 Male, age 61, both hemispheres 40.3
2393 Male, age 80, right hemisphere 35.9
2484 Female, age 94, left hemisphere 28.4
2821 Male, age 75, both hemispheres 27.3
Nucleus of the diagonal band
nTPM: 30.1
1812 Female, age 91, both hemispheres 33.8
2775 Male, age 80, right hemisphere 33.2
1979 Male, age 74, unknown 31.8
2195 Female, age 85, both hemispheres 29.4
2029 Male, age 61, right hemisphere 22.4
Putamen
nTPM: 34.0
2482 Female, age 94, left hemisphere 43.2
1838 Male, age 80, right hemisphere 38.0
2466 Female, age 79, unknown 33.1
2489 Female, age 72, unknown 31.6
2647 Male, age 75, left hemisphere 31.6
1937 Female, age 91, right hemisphere 30.7
1829 Male, age 74, unknown 29.7
Septal nuclei
nTPM: 32.4
2199 Male, age 80, right hemisphere 39.2
2059 Female, age 85, both hemispheres 32.4
2031 Female, age 72, unknown 32.1
1960 Male, age 74, unknown 31.7
2394 Male, age 61, left hemisphere 31.4
2629 Female, age 94, right hemisphere 30.9
2009 Female, age 91, both hemispheres 29.3
Stria terminalis, bed nucleus
nTPM: 27.8
2201 Male, age 74, unknown 30.2
1974 Female, age 91, both hemispheres 27.2
2486 Female, age 94, both hemispheres 26.1

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 36.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 36.3
Samples: 246

Max nTPM: 70.0
Min nTPM: 9.9
Std nTPM: 9.6
Median nTPM: 35.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 70.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 69.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 65.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 63.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 62.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 61.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 59.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 57.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 56.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 56.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 56.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 33.4
Samples: 246

Max nTPM: 99.6
Min nTPM: 4.4
Std nTPM: 11.8
Median nTPM: 32.0
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 99.6
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 81.5
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 81.2
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 76.5
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 70.0
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 68.0
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 66.6
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 62.2
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 60.8
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 58.9
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 57.2
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Brain - Putamen (basal ganglia)
Average nTPM: 35.9
Samples: 205

Max nTPM: 106.5
Min nTPM: 12.8
Std nTPM: 11.9
Median nTPM: 34.3
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 106.5
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 87.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 69.6
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 68.8
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 60.6
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 60.4
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 58.9
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 58.7
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 56.9
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 56.7
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 56.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 116.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 104.8
FF:10164-103B2 76 years, female 104.8
Nucleus accumbens
Scaled Tags Per Million: 86.3
FF:10037-101F1 23-56 years, mixed 86.3
Putamen
Scaled Tags Per Million: 74.2
FF:10176-103C5 60 years, female 74.2
Globus pallidus
Scaled Tags Per Million: 116.0
FF:10161-103A8 76 years, female 124.5
FF:10175-103C4 60 years, female 107.5

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 54.4
Pig sample Sample description nTPM
Caudate
nTPM: 42.6
Samples: 4

Max nTPM: 47.6
Min nTPM: 38.2
Sample A Female 38.2
Sample B Female 45.2
Sample C Male 47.6
Sample D Male 39.5
Putamen
nTPM: 51.0
Samples: 4

Max nTPM: 61.4
Min nTPM: 37.9
Sample A Female 61.4
Sample B Female 37.9
Sample C Male 47.6
Sample D Male 57.0
Septum
nTPM: 54.4
Samples: 4

Max nTPM: 67.5
Min nTPM: 45.5
Sample A Female 48.0
Sample B Female 45.5
Sample C Male 67.5
Sample D Male 56.4
Ventral pallidum
nTPM: 52.7
Samples: 4

Max nTPM: 64.1
Min nTPM: 39.2
Sample A Female 39.2
Sample B Female 49.5
Sample C Male 64.1
Sample D Male 57.8

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 48.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 48.6
Samples: 4

Max nTPM: 51.2
Min nTPM: 46.1
Sample A Male 46.1
Sample B Male 48.9
Sample C Female 48.0
Sample D Female 51.2
Septum
nTPM: 45.3
Samples: 4

Max nTPM: 49.1
Min nTPM: 41.1
Sample A Male 41.1
Sample B Male 45.1
Sample C Female 45.8
Sample D Female 49.1
Ventral forebrain
nTPM: 46.4
Samples: 4

Max nTPM: 49.6
Min nTPM: 42.5
Sample A Male 42.5
Sample B Male 45.5
Sample C Female 49.6
Sample D Female 48.0

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 2.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.4
512530 Antisense, RP_040809_02_B01, Mouse strain C57BL/6J (56 days, male) 2.4
Pallidum
Expression energy: 1.7
512530 Antisense, RP_040809_02_B01, Mouse strain C57BL/6J (56 days, male) 1.7

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