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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:101.2 nTPM
FANTOM5:168.8 Scaled Tags Per Million
Pig:301.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA026307Antibody HPA051783Antibody HPA051785Antibody HPA053973Antibody CAB006849
Glial cells Not detectedNot detectedNot detectedNot detectedNot detected
Neuronal cells HighHighMediumMediumHigh









CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

101.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 101.2
Samples: 246

Max nTPM: 220.1
Min nTPM: 8.7
Std nTPM: 51.8
Median nTPM: 98.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 220.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 220.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 213.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 213.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 208.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 204.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 203.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 201.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 200.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 193.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 192.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 188.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 187.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 187.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 187.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 186.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 184.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 183.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 183.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 182.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 180.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 177.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 177.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 176.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 176.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 175.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 175.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 174.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 170.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 169.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 168.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 165.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 161.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 161.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 159.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 158.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 158.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 156.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 155.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 155.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 153.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 153.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 151.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 151.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 150.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 150.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 148.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 148.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 147.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 146.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 146.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 146.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 145.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 144.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 143.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 141.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 141.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 140.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 140.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 140.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 139.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 139.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 138.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 137.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 137.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 135.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 135.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 135.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 135.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 134.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 133.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 132.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 131.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 131.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 130.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 130.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 129.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 129.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 129.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 127.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 127.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 126.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 126.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 126.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 125.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 125.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 125.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 123.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 122.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 122.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 121.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 121.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 121.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 121.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 120.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 120.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 119.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 118.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 118.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 117.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 116.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 113.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 113.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 112.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 112.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 110.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 109.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 109.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 108.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 108.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 107.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 105.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 104.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 103.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 103.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 103.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 102.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 102.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 101.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 101.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 100.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 99.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 99.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 98.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 97.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 97.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 96.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 95.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 93.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 93.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 93.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 91.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 91.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 91.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 91.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 90.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 90.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 90.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 89.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 88.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 88.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 88.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 88.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 87.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 87.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 84.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 84.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 83.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 83.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 83.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 82.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 80.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 80.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 79.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 78.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 77.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 77.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 77.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 77.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 77.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 76.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 76.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 76.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 75.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 75.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 75.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 75.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 73.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 73.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 73.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 72.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 71.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 71.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 69.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 68.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 65.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 65.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 64.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 64.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 61.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 60.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 58.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 58.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 57.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 57.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 55.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 55.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 55.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 55.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 54.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 54.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 52.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 51.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 51.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 50.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 49.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 48.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 48.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 48.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 46.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 45.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 44.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 44.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 44.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 44.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 43.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 43.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 43.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 42.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 41.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 40.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 38.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 38.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 36.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 36.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 34.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 34.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 33.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 33.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 32.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 31.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 30.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 30.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 30.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 28.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 28.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 28.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 27.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 26.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 26.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 25.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 25.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 24.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 24.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 23.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 22.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 20.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 18.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 17.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 16.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 15.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 13.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 12.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 11.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 10.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 8.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

168.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 168.8
FF:10164-103B2 76 years, female 168.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

301.6
Pig sample Sample description nTPM
Caudate
nTPM: 301.6
Samples: 4

Max nTPM: 387.3
Min nTPM: 220.3
Sample A Female 220.3
Sample B Female 284.9
Sample C Male 387.3
Sample D Male 313.9

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