We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CDK17
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • CDK17
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:20.9 nTPM
HPA Brain:74.1 nTPM
GTEx:20.9 nTPM
FANTOM5:86.9 Scaled Tags Per Million
Pig:28.4 nTPM
Mouse:116.3 nTPM
Allen mouse:21.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.1
Sample id Sample description nTPM
Amygdala
nTPM: 71.2
2514 Male, age 75, right hemisphere 75.6
2517 Female, age 94, left hemisphere 73.0
1987 Female, age 91, left hemisphere 72.9
2695 Female, age 67, right hemisphere 69.2
2814 Male, age 76, right hemisphere 65.4
Basal amygdala
nTPM: 71.2
2110 Male, age 80, left hemisphere 84.1
2243 Female, age 91, right hemisphere 71.9
2685 Female, age 94, left hemisphere 71.1
1955 Male, age 76, both hemispheres 69.8
2609 Male, age 75, right hemisphere 65.7
2827 Female, age 67, right hemisphere 64.7
Central amygdala
nTPM: 69.3
2239 Male, age 80, left hemisphere 81.7
2701 Female, age 91, right hemisphere 70.1
2515 Male, age 75, right hemisphere 67.8
2826 Female, age 94, left hemisphere 64.1
1905 Male, age 76, both hemispheres 62.6
Corticomedial amygdala
nTPM: 74.0
2829 Male, age 80, left hemisphere 84.3
2242 Female, age 91, right hemisphere 79.8
2240 Male, age 76, both hemispheres 75.6
2429 Female, age 94, left hemisphere 72.1
2535 Female, age 67, right hemisphere 67.5
2428 Male, age 75, right hemisphere 65.0
Lateral amygdala
nTPM: 74.1
2516 Male, age 75, right hemisphere 77.7
2830 Female, age 67, right hemisphere 76.8
2255 Female, age 91, right hemisphere 74.8
2256 Male, age 80, left hemisphere 74.8
1883 Male, age 76, both hemispheres 72.3
2534 Female, age 94, left hemisphere 68.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

20.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 20.9
Samples: 152

Max nTPM: 36.3
Min nTPM: 7.1
Std nTPM: 5.4
Median nTPM: 19.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 36.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 35.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 34.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 34.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 33.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 32.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 31.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 31.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 30.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 30.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 30.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 30.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 29.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 29.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 29.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 29.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 29.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 28.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 28.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 28.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 28.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 27.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 27.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 27.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 27.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 26.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 26.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 25.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 25.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 25.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 25.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 25.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 25.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 25.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 24.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 24.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 24.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 24.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 24.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 23.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 23.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 23.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 23.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 23.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 23.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 23.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 23.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 23.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 22.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 22.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 22.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 22.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 22.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 22.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 22.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 22.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 21.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 21.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 21.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 21.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 21.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 21.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 21.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 20.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 20.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 20.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 20.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 20.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 20.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 20.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 20.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 20.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 20.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 19.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 19.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 19.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 19.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 19.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 19.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 19.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 19.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 19.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 18.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 18.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 18.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 18.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 18.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 18.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 18.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 18.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 18.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 18.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 18.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 18.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 18.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 18.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 18.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 17.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 17.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 17.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 17.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 17.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 17.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 17.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 17.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 17.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 17.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 17.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 17.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 17.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 17.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 17.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 17.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 17.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 17.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 16.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 16.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 16.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 16.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 16.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 16.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 16.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 16.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 16.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 16.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 16.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 16.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 16.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 15.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 15.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 15.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 15.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 15.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 15.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 15.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 15.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 15.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 14.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 14.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 14.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 14.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 13.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 13.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 13.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 13.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 13.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 13.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 12.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 12.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 11.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 11.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 7.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

86.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 86.9
FF:10151-102I7 76 years, female 86.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

28.4
Pig sample Sample description nTPM
Amygdala
nTPM: 28.4
Samples: 4

Max nTPM: 32.7
Min nTPM: 26.1
Sample A Female 32.7
Sample B Female 27.4
Sample C Male 26.1
Sample D Male 27.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

116.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 116.3
Samples: 4

Max nTPM: 118.5
Min nTPM: 114.7
Sample A Male 116.0
Sample B Male 116.0
Sample C Female 114.7
Sample D Female 118.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

21.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.7
69262342 Antisense, RP_050303_02_B12, Mouse strain C57BL/6J (56 days, male) 21.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org