MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:108.1 nTPM
HPA Brain:590.7 nTPM
GTEx:108.1 nTPM
FANTOM5:356.7 Scaled Tags Per Million
Pig:155.9 nTPM
Mouse:83.9 nTPM
Allen mouse:7.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 590.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 484.1
2586 Male, age 75, left hemisphere 646.1
1830 Male, age 51, unknown 543.6
1833 Male, age 53, unknown 511.1
2666 Male, age 74, left hemisphere 492.4
2019 Male, age 18, unknown 488.4
2828 Female, age 72, unknown 481.4
1870 Female, age 42, unknown 455.5
2411 Female, age 72, unknown 453.6
2219 Male, age 76, both hemispheres 394.9
1827 Male, age 72, unknown 373.9
Dorsal raphe nucleus
nTPM: 385.9
2750 Male, age 76, both hemispheres 491.1
1828 Male, age 53, unknown 397.3
2016 Female, age 72, unknown 387.4
2047 Male, age 72, unknown 376.2
2298 Female, age 72, unknown 277.6
Inferior colliculus
nTPM: 351.8
2849 Male, age 72, unknown 381.3
1890 Male, age 53, unknown 379.3
1848 Female, age 42, unknown 363.6
2097 Female, age 72, unknown 282.9
Median raphe nucleus
nTPM: 415.2
2220 Male, age 76, midline 415.2
Periaquaductal grey, anterior
nTPM: 365.6
2502 Female, age 75, unknown 404.8
1947 Male, age 18, unknown 365.8
1795 Male, age 51, unknown 326.2
Periaquaductal grey, dorsal
nTPM: 314.7
2464 Female, age 72, unknown 358.7
2850 Male, age 76, both hemispheres 322.7
1831 Male, age 72, unknown 315.9
1840 Male, age 53, unknown 261.5
Periaquaductal grey, lateral
nTPM: 341.2
2053 Male, age 18, unknown 345.5
2272 Male, age 74, both hemispheres 340.6
2140 Male, age 76, both hemispheres 337.4
Pretectal area
nTPM: 351.4
2407 Male, age 75, both hemispheres 444.5
1815 Male, age 53, unknown 411.2
2316 Male, age 76, right hemisphere 393.8
1817 Female, age 42, unknown 379.8
2007 Male, age 72, unknown 379.3
2825 Male, age 18, unknown 360.0
1816 Male, age 51, unknown 320.1
1944 Female, age 72, unknown 307.9
2273 Male, age 74, both hemispheres 299.8
2224 Female, age 72, unknown 297.8
2667 Female, age 75, unknown 271.0
Red nucleus
nTPM: 590.7
2503 Female, age 72, unknown 680.8
1865 Male, age 51, unknown 663.2
2588 Male, age 74, left hemisphere 643.2
1904 Male, age 53, unknown 637.8
2227 Male, age 72, unknown 634.8
2769 Male, age 72, unknown 619.4
2785 Male, age 18, unknown 574.5
2823 Male, age 76, right hemisphere 556.8
1954 Female, age 42, unknown 546.8
2584 Male, age 75, left hemisphere 539.0
2725 Female, age 75, unknown 507.1
1821 Female, age 72, unknown 485.3
Substantia nigra
nTPM: 448.3
2583 Male, age 75, right hemisphere 511.4
2590 Female, age 75, unknown 502.3
2699 Male, age 18, unknown 486.4
2665 Male, age 74, both hemispheres 479.3
1851 Male, age 51, unknown 472.1
1941 Male, age 53, unknown 431.0
2409 Female, age 72, unknown 423.8
1916 Female, age 42, unknown 420.0
1889 Female, age 72, unknown 405.4
2241 Male, age 72, unknown 351.2
Superior colliculus
nTPM: 419.3
1913 Female, age 42, unknown 504.2
1995 Male, age 72, unknown 495.8
2668 Female, age 75, unknown 491.6
2664 Male, age 75, both hemispheres 442.6
2587 Male, age 74, left hemisphere 439.7
1839 Male, age 51, unknown 410.2
2261 Male, age 18, unknown 361.5
1796 Male, age 53, unknown 360.7
1895 Male, age 76, right hemisphere 360.1
2087 Female, age 72, unknown 327.0
Ventral tegmental area
nTPM: 463.4
2223 Female, age 72, unknown 610.4
2410 Female, age 72, unknown 498.9
2218 Male, age 76, both hemispheres 449.4
2021 Male, age 53, unknown 417.8
1942 Male, age 51, unknown 413.3
1915 Female, age 42, unknown 390.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 108.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 108.1
Samples: 139

Max nTPM: 245.5
Min nTPM: 35.3
Std nTPM: 46.4
Median nTPM: 99.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 245.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 241.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 233.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 217.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 212.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 209.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 204.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 202.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 200.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 189.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 186.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 356.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 356.7
FF:10158-103A5 76 years, female 356.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 155.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 145.5
Samples: 4

Max nTPM: 187.1
Min nTPM: 123.3
Sample A Female 137.6
Sample B Female 123.3
Sample C Male 134.0
Sample D Male 187.1
Midbrain
nTPM: 155.9
Samples: 4

Max nTPM: 244.8
Min nTPM: 93.1
Sample A Female 244.8
Sample B Female 165.8
Sample C Male 119.8
Sample D Male 93.1
Periaqueductal gray
nTPM: 115.3
Samples: 3

Max nTPM: 147.6
Min nTPM: 98.9
Sample B Female 147.6
Sample C Male 99.5
Sample D Male 98.9
Superior colliculi
nTPM: 122.5
Samples: 4

Max nTPM: 141.4
Min nTPM: 83.0
Sample A Female 131.8
Sample B Female 83.0
Sample C Male 141.4
Sample D Male 133.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 83.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 84.0
Samples: 4

Max nTPM: 89.4
Min nTPM: 71.5
Sample A Male 71.5
Sample B Male 89.4
Sample C Female 89.2
Sample D Female 85.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.6
70300923 Antisense, RP_050607_02_G01, Mouse strain C57BL/6J (56 days, male) 7.6

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