MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.3 nTPM
HPA Brain:32.4 nTPM
GTEx:24.3 nTPM
FANTOM5:34.8 Scaled Tags Per Million
Pig:22.2 nTPM
Mouse:16.2 nTPM
Allen mouse:6.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 32.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.9
2586 Male, age 75, left hemisphere 39.5
2666 Male, age 74, left hemisphere 33.8
1827 Male, age 72, unknown 32.2
2828 Female, age 72, unknown 32.0
1870 Female, age 42, unknown 28.8
1830 Male, age 51, unknown 26.3
1833 Male, age 53, unknown 25.2
2411 Female, age 72, unknown 24.9
2219 Male, age 76, both hemispheres 23.8
2019 Male, age 18, unknown 22.2
Dorsal raphe nucleus
nTPM: 27.5
2047 Male, age 72, unknown 29.4
2016 Female, age 72, unknown 27.3
2750 Male, age 76, both hemispheres 27.1
1828 Male, age 53, unknown 27.0
2298 Female, age 72, unknown 26.5
Inferior colliculus
nTPM: 30.0
2849 Male, age 72, unknown 32.0
1848 Female, age 42, unknown 30.2
1890 Male, age 53, unknown 29.1
2097 Female, age 72, unknown 28.7
Median raphe nucleus
nTPM: 24.1
2220 Male, age 76, midline 24.1
Periaquaductal grey, anterior
nTPM: 32.4
1947 Male, age 18, unknown 37.2
1795 Male, age 51, unknown 32.8
2502 Female, age 75, unknown 27.1
Periaquaductal grey, dorsal
nTPM: 28.7
1831 Male, age 72, unknown 33.2
1840 Male, age 53, unknown 27.6
2464 Female, age 72, unknown 27.1
2850 Male, age 76, both hemispheres 26.9
Periaquaductal grey, lateral
nTPM: 29.5
2140 Male, age 76, both hemispheres 30.8
2053 Male, age 18, unknown 30.3
2272 Male, age 74, both hemispheres 27.5
Pretectal area
nTPM: 30.1
1816 Male, age 51, unknown 35.8
2316 Male, age 76, right hemisphere 32.9
2407 Male, age 75, both hemispheres 32.6
1944 Female, age 72, unknown 30.5
1815 Male, age 53, unknown 30.1
1817 Female, age 42, unknown 29.9
2825 Male, age 18, unknown 29.9
2667 Female, age 75, unknown 29.4
2224 Female, age 72, unknown 29.1
2007 Male, age 72, unknown 28.2
2273 Male, age 74, both hemispheres 23.2
Red nucleus
nTPM: 26.5
2584 Male, age 75, left hemisphere 35.9
2725 Female, age 75, unknown 30.6
2823 Male, age 76, right hemisphere 29.0
2769 Male, age 72, unknown 28.4
2588 Male, age 74, left hemisphere 28.3
2227 Male, age 72, unknown 26.2
2785 Male, age 18, unknown 26.1
1904 Male, age 53, unknown 24.8
1954 Female, age 42, unknown 23.5
2503 Female, age 72, unknown 23.2
1865 Male, age 51, unknown 22.8
1821 Female, age 72, unknown 19.2
Substantia nigra
nTPM: 25.6
2665 Male, age 74, both hemispheres 32.6
2583 Male, age 75, right hemisphere 29.4
2590 Female, age 75, unknown 28.4
1889 Female, age 72, unknown 27.6
2699 Male, age 18, unknown 27.5
1851 Male, age 51, unknown 24.7
1941 Male, age 53, unknown 24.5
1916 Female, age 42, unknown 22.5
2409 Female, age 72, unknown 21.0
2241 Male, age 72, unknown 18.1
Superior colliculus
nTPM: 31.1
1796 Male, age 53, unknown 38.0
2664 Male, age 75, both hemispheres 35.7
1895 Male, age 76, right hemisphere 34.1
2261 Male, age 18, unknown 30.8
1839 Male, age 51, unknown 30.1
2087 Female, age 72, unknown 30.1
2668 Female, age 75, unknown 28.6
1913 Female, age 42, unknown 28.5
1995 Male, age 72, unknown 28.0
2587 Male, age 74, left hemisphere 26.9
Ventral tegmental area
nTPM: 25.8
2021 Male, age 53, unknown 27.8
1942 Male, age 51, unknown 27.5
1915 Female, age 42, unknown 26.6
2218 Male, age 76, both hemispheres 26.4
2223 Female, age 72, unknown 25.9
2410 Female, age 72, unknown 20.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 24.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.3
Samples: 139

Max nTPM: 38.2
Min nTPM: 13.8
Std nTPM: 5.2
Median nTPM: 23.8
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 38.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 37.4
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 37.2
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 36.2
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 36.0
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 34.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 34.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 33.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 33.1
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 33.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 31.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 34.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.8
FF:10158-103A5 76 years, female 34.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 22.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.5
Samples: 4

Max nTPM: 22.7
Min nTPM: 15.1
Sample A Female 22.7
Sample B Female 18.2
Sample C Male 17.8
Sample D Male 15.1
Midbrain
nTPM: 22.2
Samples: 4

Max nTPM: 26.4
Min nTPM: 16.5
Sample A Female 26.4
Sample B Female 16.5
Sample C Male 25.3
Sample D Male 20.7
Periaqueductal gray
nTPM: 16.7
Samples: 3

Max nTPM: 18.0
Min nTPM: 15.8
Sample B Female 16.2
Sample C Male 18.0
Sample D Male 15.8
Superior colliculi
nTPM: 20.0
Samples: 4

Max nTPM: 23.2
Min nTPM: 17.7
Sample A Female 23.2
Sample B Female 17.7
Sample C Male 19.9
Sample D Male 19.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 16.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.2
Samples: 4

Max nTPM: 20.0
Min nTPM: 14.1
Sample A Male 20.0
Sample B Male 14.1
Sample C Female 14.4
Sample D Female 16.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.9
67809268 Antisense, RP_040922_01_E12, Mouse strain C57BL/6J (56 days, male) 6.9

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