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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:109.1 nTPM
HPA Brain:56.4 nTPM
GTEx:109.1 nTPM
FANTOM5:49.9 Scaled Tags Per Million
Pig:13.8 nTPM
Mouse:4.1 nTPM
Allen mouse:0.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

56.4
Sample id Sample description nTPM
Amygdala
nTPM: 56.4
2814 Male, age 76, right hemisphere 62.8
2514 Male, age 75, right hemisphere 57.0
2695 Female, age 67, right hemisphere 56.7
1987 Female, age 91, left hemisphere 55.7
2517 Female, age 94, left hemisphere 49.6
Basal amygdala
nTPM: 48.6
2609 Male, age 75, right hemisphere 64.3
2243 Female, age 91, right hemisphere 51.9
2110 Male, age 80, left hemisphere 46.4
2685 Female, age 94, left hemisphere 44.5
1955 Male, age 76, both hemispheres 44.1
2827 Female, age 67, right hemisphere 40.6
Central amygdala
nTPM: 51.8
1905 Male, age 76, both hemispheres 60.9
2826 Female, age 94, left hemisphere 60.3
2515 Male, age 75, right hemisphere 57.9
2701 Female, age 91, right hemisphere 40.2
2239 Male, age 80, left hemisphere 39.7
Corticomedial amygdala
nTPM: 49.7
2428 Male, age 75, right hemisphere 66.6
2829 Male, age 80, left hemisphere 54.4
2242 Female, age 91, right hemisphere 46.9
2429 Female, age 94, left hemisphere 44.5
2535 Female, age 67, right hemisphere 44.0
2240 Male, age 76, both hemispheres 41.8
Lateral amygdala
nTPM: 50.8
2516 Male, age 75, right hemisphere 64.4
1883 Male, age 76, both hemispheres 60.7
2534 Female, age 94, left hemisphere 53.2
2830 Female, age 67, right hemisphere 44.9
2256 Male, age 80, left hemisphere 41.5
2255 Female, age 91, right hemisphere 39.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 109.1
Samples: 152

Max nTPM: 346.9
Min nTPM: 54.5
Std nTPM: 38.3
Median nTPM: 99.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 346.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 280.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 255.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 238.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 189.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 188.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 173.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 160.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 158.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 155.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 155.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 152.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 152.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 146.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 144.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 144.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 143.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 143.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 142.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 141.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 138.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 137.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 136.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 135.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 135.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 132.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 132.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 132.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 131.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 129.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 128.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 126.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 124.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 123.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 123.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 122.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 122.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 121.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 121.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 120.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 120.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 120.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 119.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 119.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 118.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 117.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 116.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 115.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 114.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 112.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 111.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 110.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 110.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 109.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 108.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 108.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 107.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 106.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 106.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 106.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 106.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 105.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 105.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 105.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 105.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 104.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 104.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 103.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 102.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 101.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 101.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 101.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 101.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 101.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 99.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 99.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 98.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 98.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 98.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 98.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 98.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 98.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 98.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 97.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 97.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 97.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 96.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 96.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 96.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 96.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 96.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 95.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 95.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 95.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 95.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 95.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 94.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 93.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 93.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 93.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 93.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 92.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 92.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 91.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 91.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 90.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 90.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 90.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 90.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 89.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 88.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 88.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 87.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 87.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 87.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 87.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 87.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 86.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 86.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 85.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 84.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 84.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 84.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 83.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 83.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 82.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 82.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 81.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 79.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 79.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 78.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 77.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 77.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 77.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 76.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 76.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 75.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 75.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 75.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 74.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 72.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 71.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 70.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 69.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 68.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 68.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 67.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 66.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 65.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 61.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 61.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 54.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

49.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 49.9
FF:10151-102I7 76 years, female 49.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

13.8
Pig sample Sample description nTPM
Amygdala
nTPM: 13.8
Samples: 4

Max nTPM: 15.8
Min nTPM: 11.5
Sample A Female 15.8
Sample B Female 14.7
Sample C Male 13.0
Sample D Male 11.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 4.1
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.2
Sample A Male 3.4
Sample B Male 4.8
Sample C Female 3.2
Sample D Female 4.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.1
70546209 Antisense, RP_050623_03_G05, Mouse strain C57BL/6J (56 days, male) 0.1

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