MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.0 nTPM
HPA Brain:63.3 nTPM
GTEx:39.0 nTPM
FANTOM5:42.3 Scaled Tags Per Million
Pig:31.0 nTPM
Mouse:7.8 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 63.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.8
2219 Male, age 76, both hemispheres 60.5
2019 Male, age 18, unknown 57.1
2586 Male, age 75, left hemisphere 53.3
2828 Female, age 72, unknown 50.4
1827 Male, age 72, unknown 46.6
2666 Male, age 74, left hemisphere 46.1
2411 Female, age 72, unknown 42.5
1833 Male, age 53, unknown 36.1
1830 Male, age 51, unknown 34.2
1870 Female, age 42, unknown 31.1
Dorsal raphe nucleus
nTPM: 40.6
2750 Male, age 76, both hemispheres 44.9
1828 Male, age 53, unknown 44.6
2298 Female, age 72, unknown 43.0
2047 Male, age 72, unknown 41.7
2016 Female, age 72, unknown 29.0
Inferior colliculus
nTPM: 30.7
1890 Male, age 53, unknown 33.6
2097 Female, age 72, unknown 32.6
1848 Female, age 42, unknown 29.9
2849 Male, age 72, unknown 26.8
Median raphe nucleus
nTPM: 41.2
2220 Male, age 76, midline 41.2
Periaquaductal grey, anterior
nTPM: 44.2
1795 Male, age 51, unknown 50.1
2502 Female, age 75, unknown 42.6
1947 Male, age 18, unknown 40.0
Periaquaductal grey, dorsal
nTPM: 28.7
2464 Female, age 72, unknown 31.3
1831 Male, age 72, unknown 30.7
2850 Male, age 76, both hemispheres 27.9
1840 Male, age 53, unknown 24.8
Periaquaductal grey, lateral
nTPM: 26.3
2140 Male, age 76, both hemispheres 27.7
2272 Male, age 74, both hemispheres 27.4
2053 Male, age 18, unknown 23.9
Pretectal area
nTPM: 46.4
2007 Male, age 72, unknown 69.2
1817 Female, age 42, unknown 64.9
1816 Male, age 51, unknown 64.2
1944 Female, age 72, unknown 63.8
1815 Male, age 53, unknown 55.2
2667 Female, age 75, unknown 50.4
2407 Male, age 75, both hemispheres 29.8
2273 Male, age 74, both hemispheres 29.3
2825 Male, age 18, unknown 29.3
2224 Female, age 72, unknown 28.6
2316 Male, age 76, right hemisphere 25.4
Red nucleus
nTPM: 42.6
2785 Male, age 18, unknown 55.2
2588 Male, age 74, left hemisphere 52.8
2584 Male, age 75, left hemisphere 46.5
2227 Male, age 72, unknown 42.1
1904 Male, age 53, unknown 41.7
1821 Female, age 72, unknown 41.0
2725 Female, age 75, unknown 40.6
2823 Male, age 76, right hemisphere 39.6
2769 Male, age 72, unknown 39.5
2503 Female, age 72, unknown 38.8
1865 Male, age 51, unknown 37.7
1954 Female, age 42, unknown 35.7
Substantia nigra
nTPM: 63.3
2665 Male, age 74, both hemispheres 90.1
1916 Female, age 42, unknown 90.0
1851 Male, age 51, unknown 76.0
1941 Male, age 53, unknown 70.6
2699 Male, age 18, unknown 59.9
1889 Female, age 72, unknown 58.2
2409 Female, age 72, unknown 50.2
2583 Male, age 75, right hemisphere 49.4
2241 Male, age 72, unknown 45.4
2590 Female, age 75, unknown 43.2
Superior colliculus
nTPM: 40.9
2087 Female, age 72, unknown 57.4
2668 Female, age 75, unknown 52.6
2261 Male, age 18, unknown 43.8
1796 Male, age 53, unknown 43.6
1913 Female, age 42, unknown 40.1
2664 Male, age 75, both hemispheres 37.3
1995 Male, age 72, unknown 35.6
1895 Male, age 76, right hemisphere 35.2
2587 Male, age 74, left hemisphere 34.2
1839 Male, age 51, unknown 29.5
Ventral tegmental area
nTPM: 46.8
2410 Female, age 72, unknown 59.8
1915 Female, age 42, unknown 54.6
2218 Male, age 76, both hemispheres 52.8
1942 Male, age 51, unknown 43.4
2223 Female, age 72, unknown 36.5
2021 Male, age 53, unknown 33.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 39.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.0
Samples: 139

Max nTPM: 114.9
Min nTPM: 9.6
Std nTPM: 20.2
Median nTPM: 33.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 114.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 92.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 85.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 85.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 84.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 84.5
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 81.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 77.6
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 77.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 74.6
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 73.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 42.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.3
FF:10158-103A5 76 years, female 42.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 31.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.0
Samples: 4

Max nTPM: 39.0
Min nTPM: 24.0
Sample A Female 36.9
Sample B Female 24.2
Sample C Male 39.0
Sample D Male 24.0
Midbrain
nTPM: 28.6
Samples: 4

Max nTPM: 32.2
Min nTPM: 26.5
Sample A Female 26.5
Sample B Female 26.9
Sample C Male 32.2
Sample D Male 28.6
Periaqueductal gray
nTPM: 26.1
Samples: 3

Max nTPM: 28.6
Min nTPM: 21.4
Sample B Female 28.2
Sample C Male 28.6
Sample D Male 21.4
Superior colliculi
nTPM: 28.2
Samples: 4

Max nTPM: 32.6
Min nTPM: 20.4
Sample A Female 30.7
Sample B Female 20.4
Sample C Male 32.6
Sample D Male 29.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.8
Samples: 4

Max nTPM: 8.7
Min nTPM: 6.6
Sample A Male 8.6
Sample B Male 7.3
Sample C Female 6.6
Sample D Female 8.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
69079997 Antisense, RP_050324_01_B09, Mouse strain C57BL/6J (56 days, male) 1.0

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