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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Mouse brain, Intensity
Medulla oblongatai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

21.988
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:63.5 nTPM
FANTOM5:104.4 Scaled Tags Per Million
Pig:82.0 nTPM

MEDULLA OBLONGATA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA043562
Medulla oblongata mean intensity 21.988
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the solitary tract 2.334
Raphe magnus nucleus 0.543
Cochlear nucleus 4.134
Lateral paragigantocellular nucleus 1.953
Raphe pallidus nucleus 0.587
Facial nucleus 1.371
Hypoglossal nucleus 0.896
Ambiguus nucleus 1.065
External cuneate nucleus 1.265
Inferior olivary nucleus 1.582
Raphe obscures nucleus 0.109
Dorsal motor nucleus of vagus 21.988

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

63.5
Sample id Sample description nTPM
Area postrema
nTPM: 55.3
2306 Male, age 80, both hemispheres 60.3
2799 Male, age 61, both hemispheres 58.0
2054 Male, age 76, both hemispheres 47.5
Dorsal medullary reticular nucleus
nTPM: 49.2
2040 Female, age 85, both hemispheres 53.3
2088 Male, age 76, both hemispheres 48.9
2373 Male, age 61, both hemispheres 45.4
Dorsal motor vagal complex
nTPM: 52.4
2643 Male, age 74, both hemispheres 60.2
2844 Male, age 55, unknown 59.5
2185 Male, age 76, both hemispheres 52.2
2813 Female, age 72, unknown 51.8
2133 Female, age 91, both hemispheres 51.7
2000 Male, age 74, unknown 51.0
2797 Male, age 61, both hemispheres 47.6
2807 Female, age 85, both hemispheres 45.5
Gigantocellular reticular nuclei, medullary
nTPM: 49.5
2314 Male, age 61, both hemispheres 52.1
1876 Female, age 85, both hemispheres 51.5
2310 Male, age 80, both hemispheres 50.0
2462 Male, age 74, both hemispheres 49.2
2022 Male, age 76, right hemisphere 47.8
2387 Female, age 91, both hemispheres 46.5
Gigantocellular reticular nuclei, pars
nTPM: 48.9
2084 Female, age 85, both hemispheres 51.5
2706 Male, age 80, both hemispheres 49.4
2330 Male, age 80, both hemispheres 48.8
2336 Male, age 61, both hemispheres 48.0
2168 Male, age 76, both hemispheres 46.7
Inferior olive
nTPM: 55.5
2563 Male, age 74, both hemispheres 60.4
2628 Female, age 91, both hemispheres 56.9
2085 Female, age 85, both hemispheres 55.7
2178 Male, age 61, both hemispheres 53.4
2379 Male, age 80, both hemispheres 50.9
Lateral medullary reticular nucleus
nTPM: 54.8
2852 Male, age 80, both hemispheres 62.4
2305 Male, age 74, both hemispheres 56.7
2804 Female, age 91, both hemispheres 54.4
2044 Male, age 76, both hemispheres 53.3
2190 Female, age 85, both hemispheres 51.2
2374 Male, age 61, both hemispheres 50.6
Medial olivary nucleus
nTPM: 57.2
1943 Male, age 61, both hemispheres 60.5
2138 Female, age 91, both hemispheres 58.8
2851 Male, age 80, both hemispheres 56.1
1962 Male, age 76, both hemispheres 53.5
Medial vestibular nucleus
nTPM: 50.5
2801 Male, age 74, both hemispheres 54.8
2624 Male, age 61, both hemispheres 51.6
2803 Female, age 91, both hemispheres 50.9
2743 Female, age 85, both hemispheres 50.0
2093 Male, age 80, both hemispheres 49.2
2134 Male, age 76, both hemispheres 46.9
Motor hypoglossal nucleus
nTPM: 51.0
2125 Female, age 91, both hemispheres 56.5
2182 Male, age 80, both hemispheres 55.9
2132 Female, age 85, both hemispheres 53.3
2277 Male, age 76, both hemispheres 47.2
2461 Male, age 61, both hemispheres 42.1
Nucleus ambiguus
nTPM: 63.5
2096 Female, age 85, both hemispheres 68.9
2071 Male, age 76, both hemispheres 58.1
Nucleus cuneatus
nTPM: 52.0
2564 Male, age 74, both hemispheres 60.1
2131 Male, age 76, both hemispheres 53.9
2100 Male, age 76, both hemispheres 52.4
2380 Male, age 80, both hemispheres 52.2
2381 Male, age 80, both hemispheres 51.5
2805 Female, age 91, both hemispheres 51.2
2808 Female, age 85, both hemispheres 50.3
2562 Male, age 61, both hemispheres 49.3
2376 Male, age 61, both hemispheres 47.2
Nucleus gracilis
nTPM: 54.8
2627 Male, age 74, both hemispheres 59.2
2299 Female, age 85, both hemispheres 53.0
2382 Male, age 80, both hemispheres 52.3
Nucleus raphe obscurus
nTPM: 54.3
2142 Male, age 76, midline 58.3
2845 Female, age 85, midline 53.6
2800 Male, age 61, midline 51.1
Nucleus raphe pallidus
nTPM: 56.8
1924 Male, age 61, midline 61.8
2145 Male, age 76, midline 55.3
2183 Male, age 80, midline 53.3
Nucleus tractus solitarii
nTPM: 47.8
2307 Male, age 80, both hemispheres 55.2
2191 Female, age 85, both hemispheres 51.7
2656 Male, age 76, both hemispheres 50.3
2144 Female, age 91, right hemisphere 33.8
Parvicellular reticular nuclei
nTPM: 50.2
2119 Male, age 80, both hemispheres 55.3
2095 Male, age 76, both hemispheres 50.1
2558 Male, age 74, both hemispheres 45.2
Parvicellular reticular nuclei, medullary
nTPM: 50.0
2091 Female, age 85, both hemispheres 52.1
2189 Female, age 91, both hemispheres 50.6
2181 Male, age 80, left hemisphere 47.3
Peritrigeminal nucleus
nTPM: 53.3
2067 Female, age 85, both hemispheres 60.8
2136 Male, age 76, both hemispheres 51.6
2179 Male, age 61, both hemispheres 47.6
Prepositus hypoglossal nucleus
nTPM: 51.1
2086 Male, age 80, both hemispheres 53.8
2855 Female, age 85, right hemisphere 48.4
Spinal trigeminal nucleus, caudal
nTPM: 53.1
2642 Male, age 74, both hemispheres 60.0
2447 Male, age 76, both hemispheres 54.7
2308 Male, age 80, both hemispheres 54.3
2312 Male, age 61, both hemispheres 50.9
2390 Female, age 91, both hemispheres 45.8
Spinal trigeminal nucleus, interpolar
nTPM: 49.0
2066 Male, age 76, right hemisphere 50.6
2033 Male, age 80, both hemispheres 49.9
2386 Female, age 85, both hemispheres 49.5
2625 Male, age 61, both hemispheres 48.3
2389 Female, age 91, both hemispheres 46.6
Spinal vestibular nucleus
nTPM: 49.4
2748 Male, age 76, both hemispheres 55.0
2780 Male, age 80, both hemispheres 52.4
2186 Female, age 91, both hemispheres 49.1
2796 Male, age 61, both hemispheres 48.9
2806 Female, age 85, both hemispheres 46.8
2384 Male, age 74, both hemispheres 44.1
Superior vestibular nucleus
nTPM: 53.2
2061 Male, age 76, both hemispheres 57.3
2383 Male, age 74, both hemispheres 53.2
2015 Male, age 80, both hemispheres 49.1
Ventral medullary reticular nucleus
nTPM: 50.0
2060 Male, age 76, both hemispheres 54.8
2372 Male, age 61, both hemispheres 45.3
Ventrolateral medulla, A1-C1 cell groups
nTPM: 53.0
2118 Male, age 80, both hemispheres 57.2
1986 Male, age 76, both hemispheres 53.2
2302 Female, age 91, both hemispheres 52.4
2180 Male, age 61, both hemispheres 51.8
2741 Female, age 85, both hemispheres 50.5

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

104.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 104.4
FF:10155-103A2 76 years, female 119.5
FF:10038-101F2 18-64 years, mixed 105.5
FF:10174-103C3 60 years, female 88.3

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

82.0
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 82.0
Samples: 4

Max nTPM: 85.6
Min nTPM: 74.9
Sample A Female 82.5
Sample B Female 74.9
Sample C Male 85.6
Sample D Male 85.1

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