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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:72.1 nTPM
FANTOM5:169.4 Scaled Tags Per Million
Pig:59.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA007611
Glial cells High
Neuronal cells High


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

72.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 72.1
Samples: 246

Max nTPM: 325.0
Min nTPM: 14.6
Std nTPM: 48.9
Median nTPM: 61.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 325.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 319.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 286.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 239.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 223.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 209.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 208.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 205.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 190.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 189.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 178.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 177.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 177.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 163.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 162.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 156.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 149.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 145.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 145.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 142.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 138.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 128.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 128.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 128.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 124.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 123.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 122.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 119.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 119.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 118.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 117.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 112.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 112.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 111.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 110.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 108.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 107.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 106.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 106.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 104.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 104.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 104.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 103.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 101.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 98.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 98.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 97.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 96.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 95.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 95.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 94.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 92.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 92.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 91.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 91.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 91.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 91.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 90.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 89.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 89.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 88.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 88.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 88.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 87.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 87.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 87.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 86.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 84.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 84.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 84.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 84.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 81.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 81.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 80.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 80.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 79.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 79.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 78.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 78.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 78.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 78.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 77.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 77.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 76.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 76.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 75.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 74.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 74.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 74.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 73.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 73.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 72.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 72.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 72.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 71.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 71.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 70.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 70.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 70.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 70.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 70.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 69.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 69.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 68.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 68.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 67.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 67.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 66.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 66.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 65.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 65.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 65.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 64.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 64.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 64.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 63.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 63.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 63.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 63.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 63.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 62.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 62.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 61.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 61.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 60.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 58.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 58.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 58.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 57.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 56.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 56.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 56.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 55.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 55.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 55.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 55.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 54.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 54.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 54.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 53.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 53.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 53.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 52.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 52.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 51.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 51.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 50.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 50.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 50.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 50.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 50.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 49.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 49.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 49.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 49.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 49.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 48.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 47.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 47.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 47.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 46.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 46.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 45.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 45.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 45.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 45.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 44.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 44.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 43.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 43.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 43.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 43.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 42.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 42.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 42.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 41.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 41.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 40.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 40.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 40.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 40.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 40.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 40.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 40.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 39.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 39.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 39.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 38.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 38.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 38.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 37.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 37.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 36.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 36.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 35.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 35.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 34.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 34.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 34.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 34.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 34.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 34.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 34.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 34.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 34.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 33.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 33.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 33.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 33.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 33.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 33.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 33.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 32.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 32.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 31.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 31.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 31.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 30.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 29.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 29.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 29.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 29.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 28.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 28.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 28.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 27.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 26.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 25.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 25.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 24.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 24.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 24.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 23.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 23.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 22.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 22.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 21.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 21.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 21.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 20.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 18.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 17.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 15.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 15.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 14.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 14.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

169.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 169.4
FF:10164-103B2 76 years, female 169.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

59.8
Pig sample Sample description nTPM
Caudate
nTPM: 59.8
Samples: 4

Max nTPM: 67.0
Min nTPM: 51.4
Sample A Female 51.4
Sample B Female 59.5
Sample C Male 67.0
Sample D Male 61.2

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