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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:128.2 nTPM
HPA Brain:476.9 nTPM
GTEx:128.2 nTPM
FANTOM5:285.6 Scaled Tags Per Million
Pig:105.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

476.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 339.3
2565 Male, age 75, midline 475.8
2194 Female, age 79, both hemispheres 353.5
2048 Male, age 55, midline 304.0
2816 Male, age 47, midline 294.6
1981 Female, age 72, midline 268.6
Cervical spinal cord, dorsal horn
nTPM: 278.8
2173 Female, age 72, unknown 300.6
1877 Male, age 55, unknown 289.6
2721 Male, age 90, both hemispheres 285.8
2069 Male, age 47, both hemispheres 281.2
2296 Male, age 66, both hemispheres 262.4
2297 Male, age 75, both hemispheres 253.5
Cervical spinal cord, ventral horn
nTPM: 476.9
2480 Male, age 75, both hemispheres 679.1
2809 Male, age 90, both hemispheres 592.3
2295 Male, age 66, both hemispheres 519.1
2820 Female, age 79, both hemispheres 453.5
2068 Male, age 55, unknown 370.1
2098 Female, age 72, unknown 247.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 128.2
Samples: 159

Max nTPM: 416.9
Min nTPM: 43.2
Std nTPM: 64.3
Median nTPM: 114.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 416.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 341.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 334.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 314.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 294.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 286.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 283.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 268.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 264.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 259.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 248.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 242.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 234.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 222.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 220.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 212.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 207.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 205.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 195.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 193.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 193.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 189.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 189.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 184.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 183.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 177.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 177.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 176.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 172.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 172.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 169.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 168.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 166.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 163.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 163.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 158.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 155.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 150.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 150.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 149.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 147.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 147.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 146.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 145.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 145.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 143.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 142.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 140.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 140.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 139.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 139.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 137.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 137.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 137.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 137.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 136.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 134.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 133.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 133.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 133.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 130.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 129.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 128.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 126.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 126.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 126.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 125.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 125.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 124.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 124.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 123.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 122.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 120.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 119.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 118.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 117.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 115.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 115.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 115.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 114.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 112.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 110.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 109.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 108.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 108.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 107.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 107.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 107.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 104.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 104.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 103.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 102.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 102.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 101.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 101.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 100.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 98.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 97.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 94.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 94.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 93.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 93.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 93.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 92.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 92.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 92.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 92.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 91.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 90.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 90.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 89.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 89.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 87.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 86.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 85.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 85.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 84.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 84.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 84.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 83.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 81.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 81.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 80.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 80.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 79.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 79.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 78.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 78.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 77.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 75.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 74.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 74.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 74.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 73.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 72.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 72.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 71.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 69.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 69.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 69.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 68.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 67.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 67.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 66.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 66.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 64.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 63.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 60.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 59.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 59.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 56.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 56.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 53.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 53.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 53.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 52.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 47.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 47.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 43.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

285.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 285.6
FF:10181-103D1 60 years, female 308.6
FF:10159-103A6 76 years, female 262.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

105.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 96.7
Samples: 4

Max nTPM: 118.7
Min nTPM: 72.8
Sample A Female 97.2
Sample B Female 98.2
Sample C Male 72.8
Sample D Male 118.7
Ventral spinal cord
nTPM: 105.1
Samples: 4

Max nTPM: 113.2
Min nTPM: 98.4
Sample A Female 113.2
Sample B Female 103.6
Sample C Male 98.4
Sample D Male 105.3

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