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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:23.1 nTPM
HPA:10.2 nTPM
GTEx:23.1 nTPM
FANTOM5:17.0 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA019616
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

10.2
overview
Male, age 65
Small intestine sample 232
nTPM: 9.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 9.2
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 10.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 11

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

23.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 23.1
Samples: 187

Max nTPM: 57.8
Min nTPM: 1.5
Std nTPM: 12.1
Median nTPM: 22.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 57.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 51.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 50.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 50.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 50.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 50.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 49.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 49.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 49.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 48.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 46.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 45.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 44.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 42.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 42.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 41.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 39.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 39.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 38.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 38.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 38.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 37.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 36.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 35.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 35.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 35.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 35.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 34.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 34.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 34.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 34.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 34.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 33.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 33.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 33.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 33.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 32.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 31.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 31.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 31.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 31.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 31.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 30.9
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 30.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 30.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 30.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 30.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 30.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 29.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 29.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 29.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 29.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 28.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 28.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 28.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 28.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 28.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 28.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 28.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 28.1
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 27.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 27.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 27.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 27.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 27.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 26.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 26.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 26.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 26.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 26.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 25.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 25.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 25.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 25.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 25.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 25.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 25.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 25.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 24.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 24.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 24.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 24.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 24.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 24.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 24.3
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 24.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 23.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 23.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 23.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 23.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 22.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 22.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 22.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 22.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 22.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 22.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 22.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 22.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 22.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 22.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 22.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 21.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 21.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 21.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 20.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 20.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 20.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 20.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 20.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 20.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 20.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 20.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 19.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 19.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 19.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 19.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 19.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 19.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 19.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 19.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 18.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 18.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 18.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 18.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 17.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 17.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 17.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 17.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 17.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 17.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 17.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 17.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 16.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 16.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 16.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 16.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 16.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 16.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 16.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 15.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 15.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 15.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 15.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 15.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 14.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 14.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 14.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 14.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 13.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 12.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 12.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 12.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 11.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 10.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 9.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 9.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 8.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 8.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 8.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 7.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 7.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 7.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 7.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 6.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 6.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 6.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 5.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 5.3
GTEX-1192X-2526-SM-59868 50-59 years, male 5.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 5.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 4.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 4.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 4.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 4.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 4.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 4.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 3.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 3.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 3.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 3.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 3.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 3.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 2.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 2.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 2.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1.5
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

17.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 17.0
FF:10024-101D6 15,40,85 years, mixed 17.0

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