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BCAS1
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  • BCAS1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:259.9 nTPM
FANTOM5:132.3 Scaled Tags Per Million
Pig:101.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA051816Antibody HPA054745Antibody CAB033558
Glial cells LowNot detectedNot detected
Neuronal cells Not detectedNot detectedNot detected







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

259.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 259.9
Samples: 246

Max nTPM: 1560.7
Min nTPM: 31.7
Std nTPM: 205.5
Median nTPM: 199.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1560.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1283.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1065.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 858.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 855.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 829.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 807.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 765.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 718.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 684.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 676.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 654.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 645.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 607.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 602.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 600.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 595.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 591.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 583.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 575.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 540.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 522.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 491.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 489.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 488.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 488.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 485.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 481.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 475.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 472.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 470.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 466.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 455.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 452.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 450.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 449.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 449.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 435.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 429.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 417.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 406.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 404.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 402.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 399.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 393.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 388.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 384.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 382.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 372.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 356.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 352.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 349.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 346.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 346.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 346.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 344.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 343.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 333.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 332.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 330.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 329.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 324.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 324.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 323.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 318.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 318.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 316.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 311.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 311.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 307.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 305.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 303.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 301.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 300.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 300.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 300.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 296.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 293.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 291.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 290.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 288.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 283.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 283.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 281.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 281.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 279.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 277.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 275.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 269.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 268.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 267.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 267.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 262.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 261.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 260.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 260.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 254.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 249.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 249.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 244.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 243.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 240.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 237.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 237.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 236.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 235.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 229.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 225.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 225.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 220.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 217.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 215.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 211.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 211.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 210.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 209.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 205.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 205.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 204.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 202.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 202.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 201.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 199.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 198.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 196.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 195.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 192.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 190.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 190.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 190.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 189.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 189.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 185.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 185.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 183.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 182.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 181.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 177.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 174.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 172.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 171.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 169.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 168.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 165.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 165.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 165.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 160.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 159.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 159.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 158.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 156.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 155.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 154.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 151.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 150.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 147.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 147.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 147.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 147.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 144.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 144.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 141.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 139.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 139.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 138.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 137.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 137.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 137.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 137.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 135.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 135.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 134.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 134.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 132.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 132.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 131.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 131.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 131.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 130.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 129.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 129.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 128.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 128.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 127.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 127.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 126.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 126.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 125.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 125.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 122.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 121.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 120.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 119.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 115.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 113.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 112.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 111.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 110.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 107.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 107.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 106.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 105.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 104.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 103.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 101.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 101.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 101.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 101.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 99.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 99.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 98.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 98.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 94.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 94.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 93.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 92.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 92.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 91.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 90.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 86.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 85.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 85.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 83.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 81.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 76.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 74.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 73.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 72.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 70.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 69.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 69.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 69.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 68.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 65.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 64.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 64.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 62.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 60.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 60.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 57.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 49.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 48.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 46.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 44.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 42.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 31.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

132.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 132.3
FF:10164-103B2 76 years, female 132.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

101.1
Pig sample Sample description nTPM
Caudate
nTPM: 101.1
Samples: 4

Max nTPM: 124.2
Min nTPM: 72.4
Sample A Female 114.2
Sample B Female 72.4
Sample C Male 124.2
Sample D Male 93.4

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