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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:249.7 nTPM
GTEx:527.0 nTPM
FANTOM5:249.9 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA051816Antibody HPA054745Antibody CAB033558
Glial cells LowNot detectedNot detected
Neuronal cells Not detectedNot detectedNot detected







HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

249.7
Sample id Sample description nTPM
Hippocampus
nTPM: 249.7
2529 Female, age 94, left hemisphere 330.9
2621 Female, age 67, right hemisphere 302.3
1911 Female, age 85, right hemisphere 247.7
1898 Male, age 80, left hemisphere 239.1
2148 Female, age 91, left hemisphere 206.1
1855 Male, age 76, left hemisphere 171.8

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

527.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 527.0
Samples: 197

Max nTPM: 2264.1
Min nTPM: 59.5
Std nTPM: 337.7
Median nTPM: 434.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 2264.1
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 1672.8
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 1608.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 1576.3
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 1445.0
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 1428.8
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 1423.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 1315.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 1251.8
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 1190.5
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 1164.9
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 1154.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 1131.0
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 1065.9
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 1055.7
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 1025.7
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 1002.8
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 997.7
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 977.4
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 972.5
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 972.0
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 956.9
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 945.0
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 944.8
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 930.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 928.7
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 901.6
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 887.3
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 858.8
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 818.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 798.6
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 785.9
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 760.9
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 754.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 749.0
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 746.1
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 737.5
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 729.3
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 722.1
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 709.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 707.2
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 701.0
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 689.7
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 686.5
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 686.0
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 677.9
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 672.9
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 671.6
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 668.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 667.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 665.0
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 662.2
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 657.2
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 656.8
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 656.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 648.1
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 635.2
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 627.9
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 620.8
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 614.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 596.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 593.2
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 587.1
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 577.7
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 573.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 571.4
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 568.0
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 564.4
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 557.4
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 550.4
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 538.0
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 533.0
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 529.5
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 527.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 522.0
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 521.1
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 520.3
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 520.3
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 520.2
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 517.6
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 516.3
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 506.1
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 505.0
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 498.1
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 496.4
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 492.9
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 490.2
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 481.3
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 476.7
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 470.2
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 455.1
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 454.4
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 452.6
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 446.7
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 444.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 444.5
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 436.7
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 435.4
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 434.3
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 433.0
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 432.1
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 429.5
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 424.9
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 422.9
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 419.7
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 419.2
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 418.4
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 418.0
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 415.9
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 414.8
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 414.0
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 412.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 411.1
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 408.7
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 407.1
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 405.3
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 400.0
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 398.0
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 395.1
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 392.4
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 388.7
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 386.8
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 382.4
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 379.7
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 373.2
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 369.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 363.7
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 356.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 355.5
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 351.7
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 336.3
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 335.3
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 329.7
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 329.6
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 328.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 323.9
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 320.4
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 317.5
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 316.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 316.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 314.7
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 313.6
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 306.9
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 304.9
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 296.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 296.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 295.4
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 291.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 284.4
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 281.6
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 277.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 276.1
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 272.6
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 271.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 271.5
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 270.2
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 264.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 264.3
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 263.5
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 259.3
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 250.7
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 248.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 248.4
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 247.0
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 244.9
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 242.7
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 239.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 233.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 230.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 227.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 224.9
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 224.0
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 219.4
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 214.0
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 213.2
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 211.4
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 209.2
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 208.0
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 206.2
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 201.5
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 194.1
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 188.7
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 186.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 174.8
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 173.7
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 170.2
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 162.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 157.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 147.6
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 145.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 133.8
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 116.4
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 108.0
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 99.2
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 97.5
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 62.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 59.5
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

249.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 249.9
FF:10153-102I9 76 years, female 258.9
FF:10169-103B7 60 years, female 240.9

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org