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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:190.2 nTPM
HPA Brain:72.8 nTPM
GTEx:190.2 nTPM
FANTOM5:184.3 Scaled Tags Per Million
Pig:92.4 nTPM
Mouse:51.3 nTPM
Allen mouse:3.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

72.8
Sample id Sample description nTPM
Amygdala
nTPM: 72.8
2814 Male, age 76, right hemisphere 90.6
2514 Male, age 75, right hemisphere 74.3
1987 Female, age 91, left hemisphere 73.3
2695 Female, age 67, right hemisphere 71.8
2517 Female, age 94, left hemisphere 54.1
Basal amygdala
nTPM: 54.8
2609 Male, age 75, right hemisphere 74.8
1955 Male, age 76, both hemispheres 70.2
2243 Female, age 91, right hemisphere 59.1
2110 Male, age 80, left hemisphere 50.4
2685 Female, age 94, left hemisphere 45.9
2827 Female, age 67, right hemisphere 28.4
Central amygdala
nTPM: 57.2
1905 Male, age 76, both hemispheres 77.1
2515 Male, age 75, right hemisphere 54.3
2701 Female, age 91, right hemisphere 52.9
2826 Female, age 94, left hemisphere 51.2
2239 Male, age 80, left hemisphere 50.7
Corticomedial amygdala
nTPM: 59.2
2428 Male, age 75, right hemisphere 68.0
2829 Male, age 80, left hemisphere 66.8
2242 Female, age 91, right hemisphere 64.7
2240 Male, age 76, both hemispheres 62.3
2429 Female, age 94, left hemisphere 60.3
2535 Female, age 67, right hemisphere 33.4
Lateral amygdala
nTPM: 50.1
1883 Male, age 76, both hemispheres 71.3
2516 Male, age 75, right hemisphere 64.8
2534 Female, age 94, left hemisphere 54.5
2255 Female, age 91, right hemisphere 42.1
2256 Male, age 80, left hemisphere 42.0
2830 Female, age 67, right hemisphere 26.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

190.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 190.2
Samples: 152

Max nTPM: 529.9
Min nTPM: 103.4
Std nTPM: 66.2
Median nTPM: 174.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 529.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 495.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 480.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 426.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 325.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 318.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 311.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 304.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 290.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 282.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 282.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 278.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 277.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 276.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 276.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 270.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 257.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 253.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 243.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 240.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 233.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 232.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 232.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 231.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 228.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 227.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 226.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 226.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 225.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 217.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 214.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 212.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 212.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 210.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 209.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 209.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 209.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 208.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 207.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 206.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 205.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 204.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 203.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 201.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 201.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 200.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 199.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 198.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 197.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 197.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 196.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 195.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 195.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 194.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 193.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 193.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 193.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 192.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 191.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 191.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 189.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 188.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 186.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 185.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 185.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 185.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 182.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 182.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 182.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 178.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 178.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 177.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 176.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 175.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 174.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 174.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 174.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 172.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 170.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 170.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 169.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 169.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 168.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 168.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 167.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 167.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 167.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 167.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 166.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 165.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 165.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 165.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 164.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 164.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 163.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 162.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 162.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 161.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 160.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 160.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 159.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 159.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 159.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 158.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 156.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 156.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 156.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 155.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 154.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 153.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 153.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 150.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 149.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 149.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 148.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 147.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 147.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 147.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 147.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 147.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 147.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 146.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 146.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 146.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 145.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 144.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 142.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 141.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 140.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 139.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 138.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 138.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 137.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 135.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 134.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 134.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 131.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 129.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 127.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 127.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 126.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 126.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 125.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 123.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 121.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 121.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 119.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 118.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 117.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 113.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 112.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 103.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

184.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 184.3
FF:10151-102I7 76 years, female 184.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

92.4
Pig sample Sample description nTPM
Amygdala
nTPM: 92.4
Samples: 4

Max nTPM: 125.9
Min nTPM: 79.0
Sample A Female 125.9
Sample B Female 84.6
Sample C Male 79.0
Sample D Male 80.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 51.4
Samples: 4

Max nTPM: 56.0
Min nTPM: 44.6
Sample A Male 44.6
Sample B Male 56.0
Sample C Female 53.9
Sample D Female 50.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.1
68745006 Antisense, RP_050210_01_A12, Mouse strain C57BL/6J (56 days, male) 3.1

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