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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:135.4 nTPM
HPA Brain:97.2 nTPM
GTEx:135.4 nTPM
FANTOM5:264.2 Scaled Tags Per Million
Pig:61.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

97.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 89.7
2048 Male, age 55, midline 108.4
1981 Female, age 72, midline 102.7
2816 Male, age 47, midline 95.4
2194 Female, age 79, both hemispheres 74.6
2565 Male, age 75, midline 67.2
Cervical spinal cord, dorsal horn
nTPM: 97.2
2296 Male, age 66, both hemispheres 195.0
2173 Female, age 72, unknown 147.2
2069 Male, age 47, both hemispheres 98.2
1877 Male, age 55, unknown 65.1
2721 Male, age 90, both hemispheres 47.3
2297 Male, age 75, both hemispheres 30.5
Cervical spinal cord, ventral horn
nTPM: 87.8
2098 Female, age 72, unknown 124.2
2068 Male, age 55, unknown 99.3
2820 Female, age 79, both hemispheres 79.1
2480 Male, age 75, both hemispheres 77.0
2295 Male, age 66, both hemispheres 76.6
2809 Male, age 90, both hemispheres 70.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

135.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 135.4
Samples: 159

Max nTPM: 336.1
Min nTPM: 25.8
Std nTPM: 62.9
Median nTPM: 125.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 336.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 300.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 297.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 289.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 274.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 269.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 268.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 267.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 267.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 265.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 260.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 251.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 234.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 228.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 227.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 226.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 223.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 221.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 217.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 214.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 209.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 200.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 199.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 199.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 198.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 197.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 194.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 190.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 187.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 187.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 186.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 186.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 186.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 184.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 183.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 183.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 181.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 181.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 178.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 174.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 173.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 170.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 169.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 166.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 161.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 161.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 161.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 161.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 159.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 159.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 155.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 153.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 151.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 151.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 150.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 149.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 147.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 147.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 147.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 145.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 145.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 145.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 144.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 142.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 141.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 136.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 135.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 133.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 132.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 131.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 130.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 129.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 128.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 127.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 127.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 126.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 126.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 126.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 126.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 125.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 124.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 122.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 121.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 120.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 117.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 116.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 115.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 114.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 112.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 111.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 110.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 108.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 108.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 108.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 107.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 106.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 106.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 105.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 104.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 104.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 104.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 104.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 104.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 101.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 101.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 100.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 100.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 100.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 100.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 99.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 99.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 98.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 98.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 94.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 93.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 92.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 92.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 91.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 90.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 90.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 90.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 89.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 88.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 86.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 85.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 85.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 85.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 84.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 82.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 82.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 81.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 80.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 80.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 79.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 79.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 78.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 75.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 75.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 73.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 72.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 70.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 68.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 68.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 68.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 66.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 57.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 56.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 56.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 55.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 49.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 48.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 48.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 40.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 37.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 36.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 35.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 30.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 26.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 25.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

264.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 264.2
FF:10159-103A6 76 years, female 282.9
FF:10181-103D1 60 years, female 245.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 51.3
Samples: 4

Max nTPM: 58.8
Min nTPM: 43.2
Sample A Female 43.2
Sample B Female 55.2
Sample C Male 58.8
Sample D Male 47.8
Ventral spinal cord
nTPM: 61.2
Samples: 4

Max nTPM: 81.8
Min nTPM: 50.0
Sample A Female 60.8
Sample B Female 50.0
Sample C Male 52.2
Sample D Male 81.8

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