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YBX1
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:154.7 nTPM
FANTOM5:18.8 Scaled Tags Per Million
Pig:138.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA040304Antibody HPA057159Antibody CAB005875
Glial cells MediumHighNot detected
Neuronal cells MediumNot detectedNot detected







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

154.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 154.7
Samples: 246

Max nTPM: 283.8
Min nTPM: 66.8
Std nTPM: 41.2
Median nTPM: 148.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 283.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 258.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 258.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 247.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 246.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 244.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 236.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 232.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 232.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 229.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 229.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 229.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 227.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 227.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 224.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 223.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 222.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 221.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 221.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 219.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 218.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 217.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 217.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 215.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 213.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 212.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 212.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 211.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 211.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 210.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 210.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 209.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 208.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 206.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 205.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 204.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 204.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 204.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 200.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 200.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 200.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 199.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 199.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 198.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 198.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 198.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 197.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 197.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 195.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 193.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 192.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 192.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 190.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 190.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 189.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 188.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 187.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 187.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 187.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 187.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 186.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 186.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 184.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 183.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 183.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 183.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 181.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 180.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 180.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 179.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 178.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 177.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 176.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 176.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 175.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 175.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 174.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 172.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 171.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 170.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 169.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 166.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 166.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 165.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 164.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 164.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 164.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 163.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 163.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 163.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 162.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 161.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 161.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 160.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 160.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 160.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 159.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 159.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 158.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 158.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 157.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 157.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 157.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 157.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 156.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 156.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 156.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 155.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 155.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 154.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 153.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 152.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 152.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 152.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 152.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 152.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 151.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 151.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 150.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 149.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 149.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 149.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 148.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 147.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 147.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 147.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 147.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 147.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 147.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 146.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 146.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 146.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 146.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 145.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 145.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 144.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 144.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 143.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 142.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 142.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 142.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 142.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 142.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 141.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 141.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 140.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 140.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 140.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 140.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 139.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 137.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 137.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 137.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 136.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 135.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 135.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 135.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 134.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 134.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 133.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 133.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 132.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 132.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 130.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 130.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 130.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 129.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 129.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 128.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 128.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 128.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 128.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 128.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 127.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 125.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 125.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 124.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 124.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 124.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 123.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 123.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 122.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 122.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 122.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 122.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 121.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 121.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 120.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 120.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 119.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 119.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 119.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 118.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 117.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 117.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 117.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 116.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 116.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 115.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 115.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 115.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 114.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 114.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 113.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 112.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 112.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 112.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 112.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 111.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 110.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 110.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 110.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 109.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 109.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 109.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 109.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 108.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 108.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 108.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 106.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 105.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 105.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 105.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 104.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 104.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 103.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 103.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 102.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 101.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 101.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 101.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 99.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 97.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 96.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 95.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 94.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 93.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 92.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 92.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 91.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 88.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 88.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 88.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 86.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 80.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 66.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

18.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 18.8
FF:10164-103B2 76 years, female 18.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

138.6
Pig sample Sample description nTPM
Caudate
nTPM: 138.6
Samples: 4

Max nTPM: 157.2
Min nTPM: 128.1
Sample A Female 128.1
Sample B Female 134.1
Sample C Male 157.2
Sample D Male 134.8

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