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YBX1
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: High
Enterocytes: High
Enterocytes - Microvilli: Not detected
Goblet cells: High
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:355.8 nTPM
HPA:355.8 nTPM
GTEx:330.7 nTPM
FANTOM5:61.2 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA040304Antibody HPA057159Antibody CAB005875
Endocrine cells High--
Enterocytes High--
Enterocytes - Microvilli Not detected--
Glandular cells -HighHigh
Goblet cells High--
Paneth cells Not detected--




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

355.8
overview
Male, age 65
Small intestine sample 232
nTPM: 384
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 364
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 352.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 323

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

330.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 330.7
Samples: 187

Max nTPM: 674.4
Min nTPM: 199.8
Std nTPM: 90.4
Median nTPM: 307.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 674.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 639.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 619.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 604.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 594.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 568.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 559.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 532.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 525.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 516.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 509.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 506.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 497.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 496.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 493.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 488.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 484.1
GTEX-1192X-2526-SM-59868 50-59 years, male 465.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 463.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 449.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 449.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 444.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 443.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 441.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 432.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 427.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 417.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 416.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 412.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 408.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 408.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 408.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 407.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 400.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 400.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 400.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 389.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 388.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 386.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 379.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 376.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 371.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 370.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 370.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 367.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 366.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 364.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 363.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 361.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 359.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 358.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 358.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 358.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 357.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 355.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 354.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 354.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 352.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 352.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 350.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 347.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 347.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 343.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 342.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 340.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 336.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 334.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 333.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 332.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 330.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 330.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 329.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 329.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 326.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 324.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 323.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 323.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 322.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 321.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 321.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 321.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 320.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 319.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 315.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 315.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 313.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 312.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 312.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 310.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 309.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 309.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 309.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 308.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 307.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 306.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 304.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 302.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 301.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 300.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 300.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 299.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 299.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 298.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 298.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 298.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 298.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 295.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 295.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 292.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 289.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 289.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 287.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 282.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 282.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 282.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 281.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 281.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 280.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 279.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 279.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 278.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 277.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 277.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 277.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 276.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 276.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 276.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 275.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 274.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 273.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 273.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 273.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 272.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 271.7
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 271.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 270.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 270.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 266.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 265.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 264.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 264.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 263.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 263.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 262.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 261.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 261.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 261.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 260.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 259.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 258.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 258.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 258.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 257.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 257.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 256.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 256.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 256.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 254.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 254.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 252.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 251.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 250.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 248.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 247.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 247.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 247.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 246.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 245.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 243.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 241.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 240.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 239.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 238.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 237.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 236.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 236.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 236.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 234.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 233.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 233.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 230.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 227.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 225.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 223.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 222.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 217.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 199.8
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

61.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 61.2
FF:10024-101D6 15,40,85 years, mixed 61.2

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