MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.2 nTPM
HPA Brain:44.4 nTPM
GTEx:19.2 nTPM
FANTOM5:40.6 Scaled Tags Per Million
Pig:69.5 nTPM
Mouse:31.2 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 44.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.0
2019 Male, age 18, unknown 50.4
1833 Male, age 53, unknown 42.2
2219 Male, age 76, both hemispheres 40.9
2828 Female, age 72, unknown 40.1
2411 Female, age 72, unknown 40.0
2666 Male, age 74, left hemisphere 39.9
1830 Male, age 51, unknown 39.7
1827 Male, age 72, unknown 39.5
1870 Female, age 42, unknown 38.9
2586 Male, age 75, left hemisphere 38.9
Dorsal raphe nucleus
nTPM: 37.3
2047 Male, age 72, unknown 40.1
1828 Male, age 53, unknown 39.9
2016 Female, age 72, unknown 37.7
2298 Female, age 72, unknown 34.9
2750 Male, age 76, both hemispheres 34.1
Inferior colliculus
nTPM: 42.2
2097 Female, age 72, unknown 43.2
1848 Female, age 42, unknown 42.1
2849 Male, age 72, unknown 42.1
1890 Male, age 53, unknown 41.4
Median raphe nucleus
nTPM: 36.5
2220 Male, age 76, midline 36.5
Periaquaductal grey, anterior
nTPM: 39.1
1947 Male, age 18, unknown 41.3
2502 Female, age 75, unknown 38.4
1795 Male, age 51, unknown 37.6
Periaquaductal grey, dorsal
nTPM: 37.2
1831 Male, age 72, unknown 40.8
2464 Female, age 72, unknown 40.2
2850 Male, age 76, both hemispheres 37.0
1840 Male, age 53, unknown 30.9
Periaquaductal grey, lateral
nTPM: 40.7
2272 Male, age 74, both hemispheres 47.2
2140 Male, age 76, both hemispheres 37.5
2053 Male, age 18, unknown 37.4
Pretectal area
nTPM: 44.4
1817 Female, age 42, unknown 51.3
2007 Male, age 72, unknown 50.0
1816 Male, age 51, unknown 48.4
2667 Female, age 75, unknown 46.7
1944 Female, age 72, unknown 46.1
1815 Male, age 53, unknown 46.0
2407 Male, age 75, both hemispheres 43.8
2273 Male, age 74, both hemispheres 43.3
2316 Male, age 76, right hemisphere 40.7
2825 Male, age 18, unknown 36.5
2224 Female, age 72, unknown 35.9
Red nucleus
nTPM: 44.3
1904 Male, age 53, unknown 47.4
1821 Female, age 72, unknown 47.2
2785 Male, age 18, unknown 46.7
1865 Male, age 51, unknown 46.5
2823 Male, age 76, right hemisphere 45.8
1954 Female, age 42, unknown 45.1
2725 Female, age 75, unknown 44.2
2503 Female, age 72, unknown 43.4
2227 Male, age 72, unknown 42.9
2588 Male, age 74, left hemisphere 42.0
2584 Male, age 75, left hemisphere 41.6
2769 Male, age 72, unknown 39.5
Substantia nigra
nTPM: 38.1
1889 Female, age 72, unknown 42.9
2583 Male, age 75, right hemisphere 40.7
1941 Male, age 53, unknown 40.1
1851 Male, age 51, unknown 38.4
2590 Female, age 75, unknown 38.3
1916 Female, age 42, unknown 38.0
2699 Male, age 18, unknown 37.0
2665 Male, age 74, both hemispheres 36.8
2409 Female, age 72, unknown 34.6
2241 Male, age 72, unknown 33.7
Superior colliculus
nTPM: 41.9
2087 Female, age 72, unknown 45.4
1913 Female, age 42, unknown 44.3
1895 Male, age 76, right hemisphere 43.6
1995 Male, age 72, unknown 42.3
1839 Male, age 51, unknown 41.8
1796 Male, age 53, unknown 40.8
2261 Male, age 18, unknown 40.8
2587 Male, age 74, left hemisphere 40.4
2668 Female, age 75, unknown 40.0
2664 Male, age 75, both hemispheres 39.8
Ventral tegmental area
nTPM: 37.1
2410 Female, age 72, unknown 40.4
2223 Female, age 72, unknown 39.5
2218 Male, age 76, both hemispheres 38.0
2021 Male, age 53, unknown 35.7
1915 Female, age 42, unknown 34.7
1942 Male, age 51, unknown 34.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 19.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.2
Samples: 139

Max nTPM: 37.1
Min nTPM: 11.2
Std nTPM: 3.3
Median nTPM: 18.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 37.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 29.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 28.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 26.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 26.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 26.4
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 25.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 25.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 24.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 24.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 23.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 40.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 40.6
FF:10158-103A5 76 years, female 40.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 69.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 50.6
Samples: 4

Max nTPM: 54.6
Min nTPM: 46.2
Sample A Female 54.6
Sample B Female 46.2
Sample C Male 48.2
Sample D Male 53.5
Midbrain
nTPM: 62.3
Samples: 4

Max nTPM: 71.9
Min nTPM: 49.0
Sample A Female 66.5
Sample B Female 49.0
Sample C Male 71.9
Sample D Male 61.8
Periaqueductal gray
nTPM: 49.7
Samples: 3

Max nTPM: 51.8
Min nTPM: 48.6
Sample B Female 48.7
Sample C Male 51.8
Sample D Male 48.6
Superior colliculi
nTPM: 69.5
Samples: 4

Max nTPM: 77.7
Min nTPM: 61.0
Sample A Female 72.0
Sample B Female 61.0
Sample C Male 77.7
Sample D Male 67.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 31.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.2
Samples: 4

Max nTPM: 32.3
Min nTPM: 29.7
Sample A Male 30.8
Sample B Male 29.7
Sample C Female 32.1
Sample D Female 32.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
112197140 Antisense, RP_110421_01_D10, Mouse strain C57BL/6J (56 days, male) 2.9
1901 Antisense, RP_040428_01_E03, Mouse strain C57BL/6J (56 days, male) 0.3

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