MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:194.4 nTPM
HPA Brain:262.0 nTPM
GTEx:194.4 nTPM
FANTOM5:155.4 Scaled Tags Per Million
Pig:62.2 nTPM
Mouse:48.8 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 262.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 161.0
2019 Male, age 18, unknown 240.2
1830 Male, age 51, unknown 224.9
2411 Female, age 72, unknown 200.6
1833 Male, age 53, unknown 185.3
1870 Female, age 42, unknown 178.3
2828 Female, age 72, unknown 143.8
2586 Male, age 75, left hemisphere 124.5
2666 Male, age 74, left hemisphere 111.5
1827 Male, age 72, unknown 104.0
2219 Male, age 76, both hemispheres 97.3
Dorsal raphe nucleus
nTPM: 124.9
2750 Male, age 76, both hemispheres 243.3
1828 Male, age 53, unknown 126.4
2016 Female, age 72, unknown 109.0
2047 Male, age 72, unknown 87.3
2298 Female, age 72, unknown 58.5
Inferior colliculus
nTPM: 107.5
1890 Male, age 53, unknown 133.0
1848 Female, age 42, unknown 109.4
2849 Male, age 72, unknown 95.8
2097 Female, age 72, unknown 91.8
Median raphe nucleus
nTPM: 143.9
2220 Male, age 76, midline 143.9
Periaquaductal grey, anterior
nTPM: 85.5
2502 Female, age 75, unknown 98.1
1947 Male, age 18, unknown 93.7
1795 Male, age 51, unknown 64.6
Periaquaductal grey, dorsal
nTPM: 68.9
2464 Female, age 72, unknown 111.0
1831 Male, age 72, unknown 75.2
2850 Male, age 76, both hemispheres 46.9
1840 Male, age 53, unknown 42.5
Periaquaductal grey, lateral
nTPM: 78.1
2272 Male, age 74, both hemispheres 99.5
2053 Male, age 18, unknown 78.4
2140 Male, age 76, both hemispheres 56.4
Pretectal area
nTPM: 96.2
2316 Male, age 76, right hemisphere 133.5
2007 Male, age 72, unknown 121.7
1815 Male, age 53, unknown 117.7
1817 Female, age 42, unknown 114.5
2273 Male, age 74, both hemispheres 98.2
2407 Male, age 75, both hemispheres 97.9
2825 Male, age 18, unknown 91.2
2667 Female, age 75, unknown 84.6
2224 Female, age 72, unknown 70.6
1944 Female, age 72, unknown 66.6
1816 Male, age 51, unknown 61.4
Red nucleus
nTPM: 262.0
1865 Male, age 51, unknown 314.0
1904 Male, age 53, unknown 313.0
2769 Male, age 72, unknown 297.0
2227 Male, age 72, unknown 292.1
2823 Male, age 76, right hemisphere 291.9
1821 Female, age 72, unknown 277.1
2785 Male, age 18, unknown 263.8
2503 Female, age 72, unknown 261.0
1954 Female, age 42, unknown 251.1
2588 Male, age 74, left hemisphere 229.3
2584 Male, age 75, left hemisphere 180.6
2725 Female, age 75, unknown 173.3
Substantia nigra
nTPM: 119.9
2583 Male, age 75, right hemisphere 177.5
1851 Male, age 51, unknown 142.7
1889 Female, age 72, unknown 140.4
2409 Female, age 72, unknown 129.6
2590 Female, age 75, unknown 128.9
1941 Male, age 53, unknown 124.3
2699 Male, age 18, unknown 105.1
1916 Female, age 42, unknown 88.1
2665 Male, age 74, both hemispheres 85.1
2241 Male, age 72, unknown 77.7
Superior colliculus
nTPM: 124.3
1995 Male, age 72, unknown 181.9
1913 Female, age 42, unknown 179.8
1895 Male, age 76, right hemisphere 151.6
2587 Male, age 74, left hemisphere 148.6
2668 Female, age 75, unknown 148.3
1839 Male, age 51, unknown 127.5
1796 Male, age 53, unknown 91.0
2087 Female, age 72, unknown 76.1
2261 Male, age 18, unknown 71.7
2664 Male, age 75, both hemispheres 66.7
Ventral tegmental area
nTPM: 171.9
2223 Female, age 72, unknown 343.1
2410 Female, age 72, unknown 207.8
2218 Male, age 76, both hemispheres 141.8
1942 Male, age 51, unknown 128.1
2021 Male, age 53, unknown 106.7
1915 Female, age 42, unknown 103.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 194.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 194.4
Samples: 139

Max nTPM: 767.7
Min nTPM: 44.9
Std nTPM: 116.6
Median nTPM: 164.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 767.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 719.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 536.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 497.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 419.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 413.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 380.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 369.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 366.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 357.5
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 352.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 155.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 155.4
FF:10158-103A5 76 years, female 155.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 62.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 59.7
Samples: 4

Max nTPM: 94.0
Min nTPM: 40.0
Sample A Female 56.0
Sample B Female 40.0
Sample C Male 48.9
Sample D Male 94.0
Midbrain
nTPM: 62.2
Samples: 4

Max nTPM: 120.6
Min nTPM: 37.0
Sample A Female 120.6
Sample B Female 50.3
Sample C Male 37.0
Sample D Male 40.9
Periaqueductal gray
nTPM: 42.5
Samples: 3

Max nTPM: 47.1
Min nTPM: 34.2
Sample B Female 47.1
Sample C Male 34.2
Sample D Male 46.2
Superior colliculi
nTPM: 57.6
Samples: 4

Max nTPM: 63.0
Min nTPM: 52.4
Sample A Female 61.1
Sample B Female 54.0
Sample C Male 52.4
Sample D Male 63.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 48.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 48.8
Samples: 4

Max nTPM: 55.0
Min nTPM: 45.2
Sample A Male 49.1
Sample B Male 55.0
Sample C Female 45.2
Sample D Female 45.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
100145368 Antisense, RP_110519_03_D04, Mouse strain C57BL/6J (56 days, male) 2.8
445 Antisense, RP_Baylor_102780, Mouse strain C57BL/6J (56 days, male) 0.0

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