MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.8 nTPM
HPA Brain:30.6 nTPM
GTEx:13.8 nTPM
FANTOM5:37.7 Scaled Tags Per Million
Pig:11.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 30.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.6
1830 Male, age 51, unknown 27.4
2666 Male, age 74, left hemisphere 27.2
1833 Male, age 53, unknown 27.1
2019 Male, age 18, unknown 25.4
2828 Female, age 72, unknown 22.8
1870 Female, age 42, unknown 21.7
1827 Male, age 72, unknown 21.2
2219 Male, age 76, both hemispheres 19.9
2411 Female, age 72, unknown 19.5
2586 Male, age 75, left hemisphere 13.5
Dorsal raphe nucleus
nTPM: 24.7
2750 Male, age 76, both hemispheres 27.1
2016 Female, age 72, unknown 26.8
1828 Male, age 53, unknown 25.5
2047 Male, age 72, unknown 22.5
2298 Female, age 72, unknown 21.6
Inferior colliculus
nTPM: 23.5
2849 Male, age 72, unknown 25.5
1890 Male, age 53, unknown 23.8
1848 Female, age 42, unknown 23.0
2097 Female, age 72, unknown 21.6
Median raphe nucleus
nTPM: 25.9
2220 Male, age 76, midline 25.9
Periaquaductal grey, anterior
nTPM: 23.5
2502 Female, age 75, unknown 27.1
1947 Male, age 18, unknown 22.3
1795 Male, age 51, unknown 21.2
Periaquaductal grey, dorsal
nTPM: 26.7
2850 Male, age 76, both hemispheres 36.4
1831 Male, age 72, unknown 26.1
2464 Female, age 72, unknown 23.3
1840 Male, age 53, unknown 20.8
Periaquaductal grey, lateral
nTPM: 30.6
2140 Male, age 76, both hemispheres 36.0
2272 Male, age 74, both hemispheres 32.0
2053 Male, age 18, unknown 23.8
Pretectal area
nTPM: 23.3
2316 Male, age 76, right hemisphere 30.0
2273 Male, age 74, both hemispheres 27.5
2825 Male, age 18, unknown 24.8
2407 Male, age 75, both hemispheres 24.3
2224 Female, age 72, unknown 23.9
1815 Male, age 53, unknown 23.5
1944 Female, age 72, unknown 23.4
1816 Male, age 51, unknown 21.0
2007 Male, age 72, unknown 19.9
2667 Female, age 75, unknown 19.6
1817 Female, age 42, unknown 19.0
Red nucleus
nTPM: 25.5
1954 Female, age 42, unknown 29.3
2823 Male, age 76, right hemisphere 29.2
1865 Male, age 51, unknown 28.1
1904 Male, age 53, unknown 27.3
2584 Male, age 75, left hemisphere 25.9
2227 Male, age 72, unknown 25.5
2503 Female, age 72, unknown 25.3
2769 Male, age 72, unknown 24.9
2785 Male, age 18, unknown 23.5
2725 Female, age 75, unknown 23.0
1821 Female, age 72, unknown 22.6
2588 Male, age 74, left hemisphere 20.9
Substantia nigra
nTPM: 25.7
2665 Male, age 74, both hemispheres 32.6
2590 Female, age 75, unknown 29.2
2699 Male, age 18, unknown 28.7
2241 Male, age 72, unknown 28.6
2583 Male, age 75, right hemisphere 27.3
1941 Male, age 53, unknown 24.9
1851 Male, age 51, unknown 22.5
1889 Female, age 72, unknown 21.6
2409 Female, age 72, unknown 21.1
1916 Female, age 42, unknown 20.8
Superior colliculus
nTPM: 23.2
2087 Female, age 72, unknown 25.8
2587 Male, age 74, left hemisphere 25.8
1995 Male, age 72, unknown 25.2
1913 Female, age 42, unknown 24.8
2261 Male, age 18, unknown 23.9
1839 Male, age 51, unknown 23.4
2668 Female, age 75, unknown 22.6
1895 Male, age 76, right hemisphere 21.6
2664 Male, age 75, both hemispheres 19.7
1796 Male, age 53, unknown 19.1
Ventral tegmental area
nTPM: 24.7
2218 Male, age 76, both hemispheres 29.1
2021 Male, age 53, unknown 27.1
2223 Female, age 72, unknown 24.6
1942 Male, age 51, unknown 24.3
1915 Female, age 42, unknown 23.3
2410 Female, age 72, unknown 20.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 13.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.8
Samples: 139

Max nTPM: 41.2
Min nTPM: 3.4
Std nTPM: 6.0
Median nTPM: 12.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 41.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 31.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 28.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 28.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 26.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 26.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 25.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 24.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 24.4
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 23.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 23.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 37.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.7
FF:10158-103A5 76 years, female 37.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 11.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.9
Samples: 4

Max nTPM: 12.7
Min nTPM: 6.8
Sample A Female 6.8
Sample B Female 12.7
Sample C Male 8.8
Sample D Male 11.2
Midbrain
nTPM: 9.3
Samples: 4

Max nTPM: 11.3
Min nTPM: 7.2
Sample A Female 7.2
Sample B Female 11.3
Sample C Male 8.7
Sample D Male 10.0
Periaqueductal gray
nTPM: 11.4
Samples: 3

Max nTPM: 12.2
Min nTPM: 10.4
Sample B Female 12.2
Sample C Male 10.4
Sample D Male 11.5
Superior colliculi
nTPM: 8.4
Samples: 4

Max nTPM: 9.7
Min nTPM: 6.2
Sample A Female 6.2
Sample B Female 9.7
Sample C Male 8.4
Sample D Male 9.2

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