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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:439.7 nTPM
FANTOM5:883.7 Scaled Tags Per Million
Pig:743.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA029501Antibody CAB019421
Glial cells Not detectedMedium
Neuronal cells MediumNot detected




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

439.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 439.7
Samples: 246

Max nTPM: 711.5
Min nTPM: 189.9
Std nTPM: 89.9
Median nTPM: 434.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 711.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 707.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 680.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 671.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 670.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 667.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 664.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 661.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 639.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 631.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 623.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 617.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 606.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 605.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 592.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 585.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 572.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 569.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 568.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 565.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 565.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 564.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 562.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 557.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 555.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 553.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 550.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 550.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 548.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 548.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 547.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 544.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 539.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 538.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 537.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 534.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 526.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 524.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 521.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 521.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 520.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 519.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 516.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 516.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 514.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 513.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 511.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 511.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 511.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 507.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 505.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 505.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 504.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 501.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 500.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 499.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 498.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 491.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 490.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 488.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 487.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 486.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 485.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 484.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 484.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 482.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 480.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 479.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 478.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 478.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 478.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 478.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 477.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 477.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 477.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 476.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 476.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 476.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 474.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 472.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 472.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 470.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 469.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 468.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 466.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 465.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 465.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 463.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 463.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 463.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 463.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 461.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 458.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 453.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 453.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 453.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 451.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 451.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 451.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 451.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 450.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 448.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 447.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 445.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 445.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 445.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 444.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 443.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 443.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 442.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 442.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 441.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 441.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 439.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 439.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 438.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 438.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 437.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 437.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 437.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 436.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 436.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 435.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 433.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 432.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 431.3
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 430.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 429.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 428.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 426.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 425.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 425.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 423.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 423.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 422.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 419.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 419.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 418.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 417.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 417.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 416.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 416.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 414.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 413.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 413.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 411.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 411.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 411.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 410.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 410.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 410.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 407.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 405.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 404.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 403.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 402.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 402.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 401.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 401.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 400.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 399.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 398.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 397.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 397.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 396.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 396.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 394.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 392.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 391.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 390.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 388.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 388.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 388.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 387.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 385.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 385.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 385.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 382.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 382.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 382.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 381.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 381.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 380.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 377.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 376.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 375.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 374.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 374.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 374.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 373.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 373.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 371.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 370.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 368.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 368.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 367.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 367.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 367.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 367.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 364.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 364.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 364.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 363.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 363.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 360.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 359.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 358.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 358.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 357.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 356.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 356.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 356.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 354.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 354.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 353.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 353.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 353.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 352.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 352.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 350.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 346.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 345.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 345.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 337.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 334.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 334.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 332.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 330.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 325.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 323.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 319.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 316.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 314.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 309.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 308.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 303.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 299.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 295.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 291.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 281.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 268.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 254.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 239.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 216.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 209.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 189.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

883.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 883.7
FF:10164-103B2 76 years, female 883.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

743.3
Pig sample Sample description nTPM
Caudate
nTPM: 743.3
Samples: 4

Max nTPM: 920.6
Min nTPM: 618.1
Sample A Female 618.1
Sample B Female 751.0
Sample C Male 920.6
Sample D Male 683.5

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