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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:220.4 nTPM
HPA Brain:527.9 nTPM
GTEx:220.4 nTPM
FANTOM5:560.3 Scaled Tags Per Million
Pig:511.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

527.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 527.9
2565 Male, age 75, midline 624.8
1981 Female, age 72, midline 586.0
2194 Female, age 79, both hemispheres 551.9
2816 Male, age 47, midline 462.8
2048 Male, age 55, midline 414.0
Cervical spinal cord, dorsal horn
nTPM: 464.9
2173 Female, age 72, unknown 610.8
2721 Male, age 90, both hemispheres 536.8
2297 Male, age 75, both hemispheres 469.7
2069 Male, age 47, both hemispheres 434.0
2296 Male, age 66, both hemispheres 371.2
1877 Male, age 55, unknown 366.6
Cervical spinal cord, ventral horn
nTPM: 526.3
2809 Male, age 90, both hemispheres 640.3
2480 Male, age 75, both hemispheres 519.5
2098 Female, age 72, unknown 519.4
2068 Male, age 55, unknown 507.6
2820 Female, age 79, both hemispheres 501.2
2295 Male, age 66, both hemispheres 469.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

220.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 220.4
Samples: 159

Max nTPM: 525.5
Min nTPM: 122.9
Std nTPM: 56.0
Median nTPM: 209.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 525.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 408.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 403.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 390.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 341.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 332.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 327.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 326.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 324.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 320.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 311.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 297.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 296.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 296.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 291.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 289.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 282.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 280.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 279.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 279.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 274.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 274.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 274.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 272.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 270.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 268.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 264.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 262.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 260.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 260.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 256.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 256.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 253.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 250.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 248.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 248.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 247.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 244.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 244.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 239.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 239.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 239.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 238.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 236.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 235.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 235.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 234.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 233.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 232.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 231.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 230.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 230.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 228.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 228.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 227.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 227.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 227.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 226.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 226.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 225.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 223.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 222.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 222.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 221.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 221.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 220.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 219.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 219.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 216.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 215.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 215.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 214.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 213.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 213.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 212.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 211.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 211.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 210.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 209.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 209.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 209.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 208.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 208.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 207.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 207.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 207.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 206.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 206.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 206.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 206.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 205.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 204.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 203.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 203.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 202.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 200.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 199.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 197.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 194.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 194.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 192.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 192.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 191.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 190.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 190.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 189.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 189.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 188.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 188.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 187.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 187.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 185.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 185.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 185.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 185.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 184.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 184.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 184.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 183.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 183.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 182.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 182.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 182.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 181.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 181.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 180.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 180.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 180.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 180.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 179.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 178.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 178.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 177.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 177.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 177.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 175.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 175.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 175.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 174.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 173.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 173.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 173.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 166.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 164.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 163.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 162.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 161.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 160.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 157.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 153.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 153.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 148.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 148.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 143.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 141.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 140.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 136.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 134.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 122.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

560.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 560.3
FF:10181-103D1 60 years, female 793.1
FF:10159-103A6 76 years, female 327.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

511.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 459.9
Samples: 4

Max nTPM: 553.3
Min nTPM: 363.9
Sample A Female 553.3
Sample B Female 363.9
Sample C Male 379.8
Sample D Male 542.7
Ventral spinal cord
nTPM: 511.3
Samples: 4

Max nTPM: 572.4
Min nTPM: 422.5
Sample A Female 522.8
Sample B Female 527.6
Sample C Male 572.4
Sample D Male 422.5

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