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  • PDZD4
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:224.4 nTPM
HPA Brain:184.4 nTPM
GTEx:224.4 nTPM
FANTOM5:157.4 Scaled Tags Per Million
Pig:96.5 nTPM
Mouse:79.4 nTPM
Allen mouse:14.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

184.4
Sample id Sample description nTPM
Amygdala
nTPM: 108.3
2517 Female, age 94, left hemisphere 146.8
1987 Female, age 91, left hemisphere 136.5
2514 Male, age 75, right hemisphere 99.4
2814 Male, age 76, right hemisphere 80.1
2695 Female, age 67, right hemisphere 78.9
Basal amygdala
nTPM: 184.4
2827 Female, age 67, right hemisphere 234.6
2243 Female, age 91, right hemisphere 218.9
2685 Female, age 94, left hemisphere 211.2
2110 Male, age 80, left hemisphere 167.5
2609 Male, age 75, right hemisphere 150.2
1955 Male, age 76, both hemispheres 123.8
Central amygdala
nTPM: 139.5
2826 Female, age 94, left hemisphere 231.6
2239 Male, age 80, left hemisphere 170.5
2515 Male, age 75, right hemisphere 130.7
2701 Female, age 91, right hemisphere 97.8
1905 Male, age 76, both hemispheres 66.6
Corticomedial amygdala
nTPM: 179.1
2535 Female, age 67, right hemisphere 244.5
2829 Male, age 80, left hemisphere 226.2
2242 Female, age 91, right hemisphere 200.9
2429 Female, age 94, left hemisphere 165.3
2428 Male, age 75, right hemisphere 139.0
2240 Male, age 76, both hemispheres 98.7
Lateral amygdala
nTPM: 148.6
2534 Female, age 94, left hemisphere 217.3
2256 Male, age 80, left hemisphere 182.3
2255 Female, age 91, right hemisphere 153.9
2830 Female, age 67, right hemisphere 149.0
2516 Male, age 75, right hemisphere 94.8
1883 Male, age 76, both hemispheres 94.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

224.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 224.4
Samples: 152

Max nTPM: 638.6
Min nTPM: 7.8
Std nTPM: 109.4
Median nTPM: 208.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 638.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 491.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 483.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 481.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 445.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 440.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 437.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 421.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 411.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 410.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 406.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 398.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 393.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 379.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 377.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 376.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 376.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 374.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 369.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 364.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 361.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 358.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 354.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 354.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 344.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 341.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 335.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 332.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 323.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 321.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 319.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 319.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 311.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 309.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 297.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 287.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 282.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 280.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 280.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 278.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 274.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 273.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 272.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 269.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 268.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 268.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 267.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 263.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 261.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 256.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 256.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 251.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 251.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 250.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 248.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 247.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 247.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 242.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 240.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 237.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 236.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 233.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 228.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 226.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 225.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 225.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 224.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 223.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 223.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 222.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 218.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 217.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 215.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 215.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 212.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 209.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 207.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 207.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 206.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 206.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 202.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 198.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 198.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 197.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 193.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 191.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 190.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 189.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 188.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 184.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 184.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 181.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 179.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 179.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 177.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 176.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 175.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 171.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 170.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 170.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 164.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 161.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 159.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 158.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 156.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 156.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 156.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 154.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 154.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 151.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 149.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 148.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 145.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 144.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 142.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 141.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 140.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 137.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 137.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 137.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 136.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 130.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 128.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 127.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 126.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 125.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 119.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 118.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 116.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 114.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 113.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 110.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 110.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 109.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 107.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 101.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 100.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 99.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 99.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 93.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 91.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 80.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 77.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 71.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 68.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 68.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 66.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 61.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 52.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 43.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 20.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 7.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

157.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 157.4
FF:10151-102I7 76 years, female 157.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

96.5
Pig sample Sample description nTPM
Amygdala
nTPM: 96.6
Samples: 4

Max nTPM: 110.2
Min nTPM: 73.2
Sample A Female 110.2
Sample B Female 73.2
Sample C Male 103.7
Sample D Male 99.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 79.4
Samples: 4

Max nTPM: 83.4
Min nTPM: 76.1
Sample A Male 76.1
Sample B Male 81.1
Sample C Female 83.4
Sample D Female 77.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

14.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.4
68844313 Antisense, RP_050222_01_D03, Mouse strain C57BL/6J (56 days, male) 14.4

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