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PDZD4
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  • PDZD4
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:159.0 nTPM
FANTOM5:167.5 Scaled Tags Per Million
Pig:144.0 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003878
Glial cells High
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

159.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 159.0
Samples: 246

Max nTPM: 348.1
Min nTPM: 22.6
Std nTPM: 75.6
Median nTPM: 152.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 348.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 346.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 345.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 342.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 337.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 333.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 331.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 322.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 308.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 300.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 298.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 296.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 293.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 291.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 289.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 286.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 283.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 279.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 279.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 277.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 276.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 276.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 273.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 271.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 267.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 261.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 261.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 260.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 259.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 257.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 255.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 254.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 253.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 252.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 251.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 250.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 249.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 248.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 246.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 241.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 239.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 236.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 235.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 235.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 233.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 229.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 229.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 226.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 224.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 222.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 222.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 221.8
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 221.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 219.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 216.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 216.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 213.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 213.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 212.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 210.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 210.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 208.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 204.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 202.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 201.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 201.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 201.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 201.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 201.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 197.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 195.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 195.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 193.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 193.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 191.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 191.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 191.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 189.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 189.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 189.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 189.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 189.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 187.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 186.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 185.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 185.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 183.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 182.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 181.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 180.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 180.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 179.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 179.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 177.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 177.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 176.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 176.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 176.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 175.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 175.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 173.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 171.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 171.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 169.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 169.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 169.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 169.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 166.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 166.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 165.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 165.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 164.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 164.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 164.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 163.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 161.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 160.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 159.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 157.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 154.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 153.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 153.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 153.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 151.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 151.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 149.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 148.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 148.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 147.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 147.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 147.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 146.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 145.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 145.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 144.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 143.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 143.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 142.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 141.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 139.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 138.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 138.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 137.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 137.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 136.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 133.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 133.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 131.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 130.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 130.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 129.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 129.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 126.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 125.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 125.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 124.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 124.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 123.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 123.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 122.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 121.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 118.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 116.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 116.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 115.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 114.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 113.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 113.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 112.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 112.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 110.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 110.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 109.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 108.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 108.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 106.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 105.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 105.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 103.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 102.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 102.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 97.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 97.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 95.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 95.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 94.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 94.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 93.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 93.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 93.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 91.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 90.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 90.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 88.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 86.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 85.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 80.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 80.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 79.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 77.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 76.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 76.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 75.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 75.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 75.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 74.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 73.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 73.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 72.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 71.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 70.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 69.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 69.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 69.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 68.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 68.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 68.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 68.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 68.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 67.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 67.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 66.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 65.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 64.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 64.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 64.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 63.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 62.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 60.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 58.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 57.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 56.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 55.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 55.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 55.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 49.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 48.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 47.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 46.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 45.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 42.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 40.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 39.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 35.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 32.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 22.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

167.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 167.5
FF:10164-103B2 76 years, female 167.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

144.0
Pig sample Sample description nTPM
Caudate
nTPM: 144.1
Samples: 4

Max nTPM: 180.4
Min nTPM: 93.9
Sample A Female 93.9
Sample B Female 156.6
Sample C Male 180.4
Sample D Male 145.3

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