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CLEC2D
HPA
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  • SUMMARY

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  • BRAIN

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  • CLEC2D
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

CLEC2D
Synonyms CLAX, LLT1, OCIL
Gene descriptioni

Full gene name according to HGNC.

C-type lectin domain family 2 member D
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 12
Cytoband p13.31
Chromosome location (bp) 9664969 - 9699553
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

9
Ensembl ENSG00000069493 (version 109)
Entrez gene 29121
HGNC HGNC:14351
UniProt Q9UHP7 (UniProt - Evidence at protein level)
neXtProt NX_Q9UHP7
GeneCards CLEC2D
Antibodypedia CLEC2D antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Receptor for KLRB1 that protects target cells against natural killer cell-mediated lysis 1, 2. Inhibits osteoclast formation 3, 4. Inhibits bone resorption 5. Modulates the release of interferon-gamma 6. Binds high molecular weight sulfated glycosaminoglycans 7.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Receptor
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Lectin
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of the natural killer cell receptor C-type lectin family. The encoded protein inhibits osteoclast formation and contains a transmembrane domain near the N-terminus as well as the C-type lectin-like extracellular domain. Several alternatively spliced transcript variants have been identified for this gene. [provided by RefSeq, Oct 2010]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
CLEC2D-201
ENSP00000261339
ENST00000261339
Q9UHP7
[Direct mapping] C-type lectin domain family 2 member D
Show all
W8JXM2
[Target identity:100%; Query identity:100%] C-type lectin domain family 2 member D variant 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0004888 [transmembrane signaling receptor activity]
GO:0005783 [endoplasmic reticulum]
GO:0005886 [plasma membrane]
GO:0007166 [cell surface receptor signaling pathway]
GO:0009897 [external side of plasma membrane]
GO:0009986 [cell surface]
GO:0016020 [membrane]
GO:0030246 [carbohydrate binding]
GO:0046703 [natural killer cell lectin-like receptor binding]
Show all
154 aa
17.7 kDa
No 0
CLEC2D-202
ENSP00000261340
ENST00000261340
Q9UHP7
[Direct mapping] C-type lectin domain family 2 member D
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0004888 [transmembrane signaling receptor activity]
GO:0005515 [protein binding]
GO:0005783 [endoplasmic reticulum]
GO:0005886 [plasma membrane]
GO:0007166 [cell surface receptor signaling pathway]
GO:0009897 [external side of plasma membrane]
GO:0009986 [cell surface]
GO:0016020 [membrane]
GO:0030246 [carbohydrate binding]
GO:0046703 [natural killer cell lectin-like receptor binding]
Show all
194 aa
22.3 kDa
No 1
CLEC2D-203
ENSP00000290855
ENST00000290855
Q9UHP7
[Direct mapping] C-type lectin domain family 2 member D
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0004888 [transmembrane signaling receptor activity]
GO:0005515 [protein binding]
GO:0005783 [endoplasmic reticulum]
GO:0005886 [plasma membrane]
GO:0007166 [cell surface receptor signaling pathway]
GO:0009897 [external side of plasma membrane]
GO:0009986 [cell surface]
GO:0016020 [membrane]
GO:0030246 [carbohydrate binding]
GO:0046703 [natural killer cell lectin-like receptor binding]
Show all
191 aa
21.8 kDa
No 1
CLEC2D-205
ENSP00000413045
ENST00000430909
A0A0C4DG81
[Direct mapping] C-type lectin domain family 2 member D
Show all
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
Show all
173 aa
20 kDa
No 0
CLEC2D-207
ENSP00000443177
ENST00000460309
H0YGG6
[Direct mapping] C-type lectin domain family 2 member D
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
133 aa
15.2 kDa
No 0
CLEC2D-208
ENSP00000446028
ENST00000466035
H0YH49
[Direct mapping] C-type lectin domain family 2 member D
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
140 aa
16.2 kDa
No 0
CLEC2D-214
ENSP00000443065
ENST00000543300
Q9UHP7
[Direct mapping] C-type lectin domain family 2 member D
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0004888 [transmembrane signaling receptor activity]
GO:0005783 [endoplasmic reticulum]
GO:0005886 [plasma membrane]
GO:0007166 [cell surface receptor signaling pathway]
GO:0009897 [external side of plasma membrane]
GO:0009986 [cell surface]
GO:0016020 [membrane]
GO:0030246 [carbohydrate binding]
GO:0046703 [natural killer cell lectin-like receptor binding]
Show all
132 aa
15 kDa
No 1
CLEC2D-215
ENSP00000437861
ENST00000544322
A0A0C4DGG4
[Direct mapping] C-type lectin domain family 2 member D
Show all
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
Show all
106 aa
12.2 kDa
No 0
CLEC2D-216
ENSP00000444818
ENST00000545918
Q9UHP7
[Direct mapping] C-type lectin domain family 2 member D
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0004888 [transmembrane signaling receptor activity]
GO:0005783 [endoplasmic reticulum]
GO:0005886 [plasma membrane]
GO:0007166 [cell surface receptor signaling pathway]
GO:0009897 [external side of plasma membrane]
GO:0009986 [cell surface]
GO:0016020 [membrane]
GO:0030246 [carbohydrate binding]
GO:0046703 [natural killer cell lectin-like receptor binding]
Show all
95 aa
10.8 kDa
No 0

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