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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
High
Inner nuclear layer:
High
Inner plexiform layer:
High
Limiting membrane:
High
Nerve fiber layer:
High
Outer plexiform layer:
High
Photoreceptor cells:
High
Pigment epithelial cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
116.3
nTPM
GTEx:
116.3
nTPM
FANTOM5:
85.0
Scaled Tags Per Million
Pig:
193.7
nTPM
Mouse:
792.2
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA044198
Pigment epithelial cells
High
Photoreceptor cells
High
Limiting membrane
High
Outer plexiform layer
High
Inner nuclear layer
High
Inner plexiform layer
High
Ganglion cells
High
Nerve fiber layer
High
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
116.3
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 116.3
Samples: 105
Max nTPM: 177.9
Min nTPM: 45.7
Std nTPM: 21.9
Median nTPM:
6_1
73 years, female
177.9
379_1
60 years, male
172.3
218_1
71 years, female
154.3
35_1
74 years, female
150.6
386_1
76 years, male
149.8
352_1
62 years, male
149.1
126_1
63 years, male
145.6
447_1
81 years, male
144.6
243_1
75 years, male
142.8
145_1
84 years, male
142.7
347_1
72 years, male
142.3
115_1
83 years, male
141.8
354_1
81 years, female
141.7
355_1
70 years, female
139.4
42_1
85 years, male
138.6
353_1
82 years, female
138.1
506_1
65 years, male
137.2
237_1
82 years, male
135.4
117_1
61 years, male
135.3
350_1
84 years, female
133.9
18_1
88 years, male
132.9
384_1
83 years, male
132.1
177_1
74 years, male
132.0
173_1
67 years, male
131.8
321_1
62 years, female
131.8
356_1
87 years, female
130.7
120_1
70 years, female
129.0
503_1
68 years, male
128.8
81_1
67 years, male
128.4
137_1
83 years, male
128.0
4_1
88 years, female
127.9
9_1
66 years, female
127.7
349_1
83 years, male
127.5
142_1
61 years, female
126.3
375_1
74 years, female
124.3
389_1
86 years, female
123.6
217_1
76 years, male
123.4
311_1
78 years, male
122.7
292_1
71 years, male
122.2
324_1
76 years, male
122.1
517_1
88 years, male
122.0
17_1
71 years, male
121.7
172_1
72 years, female
121.7
163_1
78 years, male
121.4
318_1
68 years, male
121.4
376_1
75 years, female
121.1
43_1
64 years, female
120.7
396_1
62 years, male
120.7
320_1
89 years, female
119.7
291_1
76 years, male
119.6
348_1
84 years, male
119.3
316_1
62 years, male
118.7
394_1
75 years, female
118.5
322_1
76 years, male
118.2
526_1
61 years, male
118.2
351_1
91 years, male
115.9
99_1
64 years, male
115.8
286_1
68 years, female
115.7
153_1
70 years, female
115.6
335_1
73 years, female
114.2
307_1
66 years, female
113.0
518_1
75 years, female
112.8
406_1
79 years, male
112.3
319_1
81 years, male
112.1
189_1
76 years, male
111.7
499_1
55 years, female
110.7
452_1
88 years, female
110.4
295_1
61 years, female
110.3
246_1
77 years, male
109.6
265_1
87 years, male
109.4
139_1
64 years, female
109.0
404_1
82 years, female
108.0
264_1
73 years, female
107.1
480_1
63 years, male
106.6
119_1
70 years, female
106.5
293_1
68 years, female
105.6
468_1
89 years, male
105.6
377_1
82 years, female
105.3
314_1
67 years, male
104.5
229_1
69 years, female
104.4
405_1
91 years, male
104.4
425_1
59 years, female
104.3
288_1
66 years, female
104.2
162_1
79 years, female
104.0
266_1
85 years, male
102.5
317_1
60 years, male
102.3
109_1
81 years, female
101.8
32_1
67 years, male
101.4
313_1
79 years, female
96.6
315_1
62 years, female
95.8
251_1
78 years, male
95.5
254_1
77 years, female
91.6
149_1
88 years, male
86.8
308_1
70 years, female
86.4
495_1
57 years, female
85.8
415_1
77 years, female
85.7
41_1
94 years, female
83.3
466_1
57 years, female
81.8
2_1
77 years, female
81.7
89_1
63 years, male
79.1
490_1
67 years, female
75.1
501_1
88 years, male
71.6
491_1
89 years, female
64.5
414_1
84 years, female
58.6
413_1
59 years, female
45.7
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
