MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:119.1 nTPM
HPA Brain:276.2 nTPM
GTEx:119.1 nTPM
FANTOM5:722.2 Scaled Tags Per Million
Pig:202.5 nTPM
Mouse:107.7 nTPM
Allen mouse:2.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 276.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 214.7
2411 Female, age 72, unknown 287.1
1870 Female, age 42, unknown 272.1
1830 Male, age 51, unknown 268.8
1833 Male, age 53, unknown 257.7
2019 Male, age 18, unknown 255.8
2828 Female, age 72, unknown 200.6
2666 Male, age 74, left hemisphere 163.1
2219 Male, age 76, both hemispheres 156.5
1827 Male, age 72, unknown 153.0
2586 Male, age 75, left hemisphere 131.8
Dorsal raphe nucleus
nTPM: 178.3
2750 Male, age 76, both hemispheres 297.7
2016 Female, age 72, unknown 193.5
1828 Male, age 53, unknown 162.2
2298 Female, age 72, unknown 123.2
2047 Male, age 72, unknown 115.2
Inferior colliculus
nTPM: 145.9
1890 Male, age 53, unknown 159.8
1848 Female, age 42, unknown 148.0
2097 Female, age 72, unknown 140.5
2849 Male, age 72, unknown 135.3
Median raphe nucleus
nTPM: 128.6
2220 Male, age 76, midline 128.6
Periaquaductal grey, anterior
nTPM: 139.5
2502 Female, age 75, unknown 166.7
1947 Male, age 18, unknown 148.1
1795 Male, age 51, unknown 103.5
Periaquaductal grey, dorsal
nTPM: 125.6
2464 Female, age 72, unknown 180.1
2850 Male, age 76, both hemispheres 122.3
1831 Male, age 72, unknown 116.3
1840 Male, age 53, unknown 83.6
Periaquaductal grey, lateral
nTPM: 138.4
2272 Male, age 74, both hemispheres 154.8
2053 Male, age 18, unknown 141.0
2140 Male, age 76, both hemispheres 119.3
Pretectal area
nTPM: 144.1
2316 Male, age 76, right hemisphere 204.7
1815 Male, age 53, unknown 198.1
2273 Male, age 74, both hemispheres 156.0
1817 Female, age 42, unknown 153.9
2007 Male, age 72, unknown 151.6
2825 Male, age 18, unknown 146.5
2407 Male, age 75, both hemispheres 133.7
2667 Female, age 75, unknown 131.5
2224 Female, age 72, unknown 126.6
1944 Female, age 72, unknown 92.3
1816 Male, age 51, unknown 90.4
Red nucleus
nTPM: 276.2
1865 Male, age 51, unknown 346.9
1821 Female, age 72, unknown 344.0
1904 Male, age 53, unknown 332.1
2769 Male, age 72, unknown 298.8
2227 Male, age 72, unknown 296.2
2503 Female, age 72, unknown 289.8
2785 Male, age 18, unknown 285.9
2823 Male, age 76, right hemisphere 283.1
1954 Female, age 42, unknown 278.3
2588 Male, age 74, left hemisphere 217.9
2725 Female, age 75, unknown 194.6
2584 Male, age 75, left hemisphere 146.8
Substantia nigra
nTPM: 167.1
2409 Female, age 72, unknown 235.0
1851 Male, age 51, unknown 198.2
2590 Female, age 75, unknown 184.8
1889 Female, age 72, unknown 178.2
2241 Male, age 72, unknown 170.0
2699 Male, age 18, unknown 160.5
2583 Male, age 75, right hemisphere 154.0
1941 Male, age 53, unknown 144.3
1916 Female, age 42, unknown 132.4
2665 Male, age 74, both hemispheres 114.0
Superior colliculus
nTPM: 181.3
1913 Female, age 42, unknown 283.8
1995 Male, age 72, unknown 272.6
1895 Male, age 76, right hemisphere 216.5
2587 Male, age 74, left hemisphere 210.0
1839 Male, age 51, unknown 189.4
2668 Female, age 75, unknown 182.3
1796 Male, age 53, unknown 134.1
2261 Male, age 18, unknown 113.8
2087 Female, age 72, unknown 112.7
2664 Male, age 75, both hemispheres 98.0
Ventral tegmental area
nTPM: 186.9
2410 Female, age 72, unknown 256.5
2223 Female, age 72, unknown 230.1
1942 Male, age 51, unknown 165.1
2021 Male, age 53, unknown 164.6
1915 Female, age 42, unknown 163.4
2218 Male, age 76, both hemispheres 141.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 119.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 119.1
Samples: 139

Max nTPM: 338.8
Min nTPM: 50.0
Std nTPM: 49.3
Median nTPM: 110.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 338.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 283.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 276.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 251.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 243.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 230.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 219.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 215.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 208.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 207.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 202.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 722.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 722.2
FF:10158-103A5 76 years, female 722.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 202.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 187.3
Samples: 4

Max nTPM: 281.7
Min nTPM: 135.2
Sample A Female 191.3
Sample B Female 135.2
Sample C Male 140.8
Sample D Male 281.7
Midbrain
nTPM: 202.5
Samples: 4

Max nTPM: 370.7
Min nTPM: 106.0
Sample A Female 370.7
Sample B Female 225.9
Sample C Male 107.2
Sample D Male 106.0
Periaqueductal gray
nTPM: 149.0
Samples: 3

Max nTPM: 189.3
Min nTPM: 111.7
Sample B Female 189.3
Sample C Male 111.7
Sample D Male 145.9
Superior colliculi
nTPM: 148.1
Samples: 4

Max nTPM: 167.1
Min nTPM: 112.1
Sample A Female 161.9
Sample B Female 112.1
Sample C Male 151.2
Sample D Male 167.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 107.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 107.7
Samples: 4

Max nTPM: 116.6
Min nTPM: 97.8
Sample A Male 97.8
Sample B Male 102.9
Sample C Female 116.6
Sample D Female 113.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.9
77925099 Antisense, RP_070320_02_C03, Mouse strain C57BL/6J (56 days, male) 6.5
68499189 Antisense, RP_050118_01_B02, Mouse strain C57BL/6J (56 days, male) 2.0
74749271 Antisense, RP_051219_01_B09, Mouse strain C57BL/6J (56 days, male) 0.1

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