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ST6GALNAC1
HPA
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  • ST6GALNAC1
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

ST6GALNAC1
Synonyms SIAT7A, ST6GalNAcI
Gene descriptioni

Full gene name according to HGNC.

ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Enzymes
Metabolic proteins
Potential drug targets
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 17
Cytoband q25.1
Chromosome location (bp) 76624761 - 76643786
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

3
Ensembl ENSG00000070526 (version 109)
Entrez gene 55808
HGNC HGNC:23614
UniProt Q9NSC7 (UniProt - Evidence at protein level)
neXtProt NX_Q9NSC7
GeneCards ST6GALNAC1
Antibodypedia ST6GALNAC1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Protein sialyltransferase specifically expressed in goblet cells that plays a key role in intestinal host-commensal homeostasis 1. Conjugates sialic acid with an alpha-2-6 linkage to N-acetylgalactosamine (GalNAc) glycan chains linked to serine or threonine in glycoproteins 2, 3. Catalyzes the formation of the sialyl-Tn (S-Tn) antigen, an antigen found in intestinal goblet cells, as well as ulcerative colitis (UC) and various cancers 4, 5. Protein sialylation in globlet cells is essential for mucus integrity and is required to protect the intestinal mucus against excessive bacterial proteolytic degradation 6.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Glycosyltransferase, Transferase
Gene summary (Entrez)i

Useful information about the gene from Entrez

Glycosylation of proteins affects cell-cell interaction, interactions with the matrix, and the functions of intracellular molecules. ST6GALNAC1 transfers a sialic acid, N-acetylneuraminic acid (NeuAc), in an alpha-2,6 linkage to O-linked GalNAc residues. The cancer-associated sialyl-Tn (sTn) antigen is formed by ST6GALNAC1-catalyzed sialylation of GalNAc residues on mucins (Ikehara et al., 1999 [PubMed 10536037]; Sewell et al., 2006).[supplied by OMIM, Mar 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
ST6GALNAC1-201
ENSP00000156626
ENST00000156626
Q9NSC7
[Direct mapping] Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   Phobius predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Potential drug targets
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0001665 [alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity]
GO:0005794 [Golgi apparatus]
GO:0006486 [protein glycosylation]
GO:0008373 [sialyltransferase activity]
GO:0009312 [oligosaccharide biosynthetic process]
GO:0016020 [membrane]
GO:0016740 [transferase activity]
GO:0016757 [glycosyltransferase activity]
GO:0048874 [host-mediated regulation of intestinal microbiota composition]
GO:0051851 [modulation by host of symbiont process]
GO:0097503 [sialylation]
Show all
600 aa
68.6 kDa
No 0
ST6GALNAC1-207
ENSP00000468784
ENST00000589992
K7EJA8
[Direct mapping] Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
Show all
63 aa
7.2 kDa
No 1
ST6GALNAC1-208
ENSP00000466436
ENST00000590784
K7EMB6
[Direct mapping] Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005794 [Golgi apparatus]
GO:0006486 [protein glycosylation]
GO:0008373 [sialyltransferase activity]
GO:0016020 [membrane]
GO:0016757 [glycosyltransferase activity]
GO:0097503 [sialylation]
Show all
152 aa
17.4 kDa
No 0

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