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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:581.5 nTPM
GTEx:581.5 nTPM
FANTOM5:215.6 Scaled Tags Per Million
Mouse:652.8 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

581.5
GTEx sample id Sample description nTPM
Retina
Average nTPM: 581.5
Samples: 105

Max nTPM: 1548.7
Min nTPM: 179.1
Std nTPM: 250.1
Median nTPM:
218_1 71 years, female 1548.7
354_1 81 years, female 1220.3
379_1 60 years, male 1151.6
375_1 74 years, female 1049.2
172_1 72 years, female 1044.2
356_1 87 years, female 988.1
352_1 62 years, male 976.5
355_1 70 years, female 930.1
243_1 75 years, male 925.9
347_1 72 years, male 919.1
163_1 78 years, male 914.2
319_1 81 years, male 903.1
349_1 83 years, male 893.4
350_1 84 years, female 892.7
6_1 73 years, female 888.8
447_1 81 years, male 887.7
237_1 82 years, male 887.1
394_1 75 years, female 883.2
99_1 64 years, male 850.5
321_1 62 years, female 844.2
318_1 68 years, male 819.6
351_1 91 years, male 790.2
173_1 67 years, male 783.8
386_1 76 years, male 772.0
177_1 74 years, male 766.7
317_1 60 years, male 755.9
353_1 82 years, female 753.3
506_1 65 years, male 737.3
503_1 68 years, male 722.9
384_1 83 years, male 697.6
376_1 75 years, female 685.3
389_1 86 years, female 677.9
396_1 62 years, male 669.6
452_1 88 years, female 668.8
265_1 87 years, male 662.3
286_1 68 years, female 646.6
295_1 61 years, female 642.9
335_1 73 years, female 613.3
120_1 70 years, female 609.7
42_1 85 years, male 601.0
316_1 62 years, male 597.2
480_1 63 years, male 579.7
377_1 82 years, female 575.3
404_1 82 years, female 567.5
314_1 67 years, male 564.3
115_1 83 years, male 563.1
35_1 74 years, female 562.9
292_1 71 years, male 554.2
348_1 84 years, male 548.8
425_1 59 years, female 538.5
189_1 76 years, male 528.8
291_1 76 years, male 528.6
468_1 89 years, male 524.8
142_1 61 years, female 522.3
517_1 88 years, male 513.5
264_1 73 years, female 512.3
406_1 79 years, male 504.0
145_1 84 years, male 503.0
526_1 61 years, male 501.7
9_1 66 years, female 498.6
4_1 88 years, female 497.5
229_1 69 years, female 496.3
246_1 77 years, male 494.7
320_1 89 years, female 491.7
315_1 62 years, female 487.8
324_1 76 years, male 483.3
137_1 83 years, male 470.4
499_1 55 years, female 462.7
217_1 76 years, male 458.4
307_1 66 years, female 455.7
518_1 75 years, female 453.5
266_1 85 years, male 450.6
405_1 91 years, male 446.1
126_1 63 years, male 444.9
251_1 78 years, male 443.0
153_1 70 years, female 430.2
117_1 61 years, male 414.3
254_1 77 years, female 412.2
43_1 64 years, female 411.8
41_1 94 years, female 408.1
109_1 81 years, female 398.2
293_1 68 years, female 380.9
32_1 67 years, male 374.0
162_1 79 years, female 371.8
313_1 79 years, female 364.3
17_1 71 years, male 360.7
288_1 66 years, female 358.9
322_1 76 years, male 355.1
414_1 84 years, female 339.7
415_1 77 years, female 336.7
311_1 78 years, male 336.4
119_1 70 years, female 325.3
81_1 67 years, male 315.1
18_1 88 years, male 307.1
466_1 57 years, female 303.4
490_1 67 years, female 275.0
308_1 70 years, female 273.5
2_1 77 years, female 257.5
139_1 64 years, female 233.8
491_1 89 years, female 233.1
149_1 88 years, male 232.2
89_1 63 years, male 196.0
495_1 57 years, female 191.6
501_1 88 years, male 183.5
413_1 59 years, female 179.1
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

215.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 215.6
FF:10030-101E3 24-65 years, mixed 215.6

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

652.8
Mouse sample Sample description nTPM
Retina
nTPM: 652.8
Samples: 4

Max nTPM: 739.9
Min nTPM: 574.1
Sample A Male 630.7
Sample B Male 666.4
Sample C Female 739.9
Sample D Female 574.1

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