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CYBRD1
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:227.1 nTPM
HPA:227.1 nTPM
GTEx:108.4 nTPM
FANTOM5:973.1 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA014757
Glandular cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

227.1
overview
Male, age 65
Small intestine sample 232
nTPM: 307.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 245.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 132
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 223.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

108.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 108.4
Samples: 187

Max nTPM: 342.9
Min nTPM: 13.9
Std nTPM: 76.3
Median nTPM: 81.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 342.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 335.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 330.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 318.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 307.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 298.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 297.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 293.6
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 290.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 280.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 279.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 277.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 269.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 262.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 258.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 253.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 252.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 252.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 251.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 233.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 215.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 212.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 210.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 209.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 207.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 192.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 184.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 183.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 177.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 174.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 171.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 171.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 169.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 168.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 165.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 162.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 160.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 158.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 156.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 156.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 155.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 153.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 151.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 149.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 148.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 145.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 144.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 143.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 142.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 141.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 136.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 134.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 132.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 132.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 130.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 129.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 128.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 127.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 127.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 120.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 120.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 116.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 116.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 114.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 111.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 109.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 107.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 106.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 106.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 104.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 104.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 103.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 100.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 99.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 97.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 96.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 95.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 95.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 94.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 92.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 92.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 90.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 90.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 89.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 89.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 89.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 89.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 85.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 85.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 84.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 83.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 83.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 81.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 81.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 80.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 80.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 79.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 78.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 77.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 76.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 76.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 74.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 74.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 74.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 72.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 72.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 72.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 70.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 69.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 68.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 68.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 68.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 67.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 66.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 66.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 65.7
GTEX-1192X-2526-SM-59868 50-59 years, male 65.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 64.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 63.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 63.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 63.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 62.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 62.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 61.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 60.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 60.6
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 60.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 59.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 59.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 59.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 57.6
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 54.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 53.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 53.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 52.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 52.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 52.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 51.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 51.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 51.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 51.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 51.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 50.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 50.4
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 50.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 49.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 49.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 48.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 48.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 48.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 47.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 46.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 46.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 46.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 45.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 44.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 44.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 43.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 43.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 43.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 42.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 42.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 42.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 41.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 40.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 40.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 40.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 39.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 38.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 38.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 38.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 37.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 36.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 36.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 36.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 36.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 34.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 33.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 31.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 30.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 29.7
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 26.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 26.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 26.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 25.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 24.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 13.9
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

973.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 973.1
FF:10024-101D6 15,40,85 years, mixed 973.1

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