MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.3 nTPM
HPA Brain:60.0 nTPM
GTEx:48.3 nTPM
FANTOM5:136.2 Scaled Tags Per Million
Pig:46.6 nTPM
Mouse:29.1 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 60.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.7
1870 Female, age 42, unknown 57.6
2411 Female, age 72, unknown 55.0
1827 Male, age 72, unknown 54.4
2828 Female, age 72, unknown 51.0
1833 Male, age 53, unknown 49.2
1830 Male, age 51, unknown 46.2
2019 Male, age 18, unknown 45.2
2219 Male, age 76, both hemispheres 44.7
2666 Male, age 74, left hemisphere 37.5
2586 Male, age 75, left hemisphere 36.8
Dorsal raphe nucleus
nTPM: 51.5
2298 Female, age 72, unknown 60.5
2750 Male, age 76, both hemispheres 57.4
2047 Male, age 72, unknown 52.7
1828 Male, age 53, unknown 46.5
2016 Female, age 72, unknown 40.3
Inferior colliculus
nTPM: 45.6
2097 Female, age 72, unknown 54.6
1848 Female, age 42, unknown 48.0
1890 Male, age 53, unknown 41.2
2849 Male, age 72, unknown 38.7
Median raphe nucleus
nTPM: 60.0
2220 Male, age 76, midline 60.0
Periaquaductal grey, anterior
nTPM: 50.0
1947 Male, age 18, unknown 56.0
2502 Female, age 75, unknown 51.7
1795 Male, age 51, unknown 42.2
Periaquaductal grey, dorsal
nTPM: 44.0
2850 Male, age 76, both hemispheres 50.1
2464 Female, age 72, unknown 44.3
1840 Male, age 53, unknown 41.3
1831 Male, age 72, unknown 40.0
Periaquaductal grey, lateral
nTPM: 44.3
2053 Male, age 18, unknown 47.3
2140 Male, age 76, both hemispheres 47.1
2272 Male, age 74, both hemispheres 38.7
Pretectal area
nTPM: 48.9
2667 Female, age 75, unknown 55.6
1817 Female, age 42, unknown 55.1
1815 Male, age 53, unknown 53.7
2007 Male, age 72, unknown 52.6
2224 Female, age 72, unknown 52.4
1816 Male, age 51, unknown 51.8
1944 Female, age 72, unknown 47.1
2825 Male, age 18, unknown 45.6
2273 Male, age 74, both hemispheres 44.3
2316 Male, age 76, right hemisphere 43.1
2407 Male, age 75, both hemispheres 36.0
Red nucleus
nTPM: 49.3
1821 Female, age 72, unknown 64.2
1865 Male, age 51, unknown 55.6
1954 Female, age 42, unknown 54.9
1904 Male, age 53, unknown 52.8
2725 Female, age 75, unknown 51.0
2503 Female, age 72, unknown 50.9
2769 Male, age 72, unknown 49.1
2227 Male, age 72, unknown 48.7
2823 Male, age 76, right hemisphere 48.0
2785 Male, age 18, unknown 43.2
2588 Male, age 74, left hemisphere 42.4
2584 Male, age 75, left hemisphere 30.5
Substantia nigra
nTPM: 50.7
1916 Female, age 42, unknown 67.4
1851 Male, age 51, unknown 58.9
1889 Female, age 72, unknown 56.4
1941 Male, age 53, unknown 54.8
2241 Male, age 72, unknown 54.6
2409 Female, age 72, unknown 53.9
2699 Male, age 18, unknown 50.1
2590 Female, age 75, unknown 39.4
2583 Male, age 75, right hemisphere 37.4
2665 Male, age 74, both hemispheres 34.5
Superior colliculus
nTPM: 44.8
2587 Male, age 74, left hemisphere 49.8
1796 Male, age 53, unknown 48.5
1895 Male, age 76, right hemisphere 48.1
1913 Female, age 42, unknown 47.2
2087 Female, age 72, unknown 46.6
2261 Male, age 18, unknown 45.7
1839 Male, age 51, unknown 45.3
2668 Female, age 75, unknown 44.7
1995 Male, age 72, unknown 39.6
2664 Male, age 75, both hemispheres 32.4
Ventral tegmental area
nTPM: 56.4
2410 Female, age 72, unknown 66.4
2218 Male, age 76, both hemispheres 64.0
2223 Female, age 72, unknown 58.7
1915 Female, age 42, unknown 56.4
2021 Male, age 53, unknown 47.2
1942 Male, age 51, unknown 45.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 48.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.3
Samples: 139

Max nTPM: 86.7
Min nTPM: 25.3
Std nTPM: 11.2
Median nTPM: 46.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 86.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 81.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 79.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 79.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 76.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 71.5
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 70.8
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 70.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 69.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 68.6
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 64.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 136.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 136.2
FF:10158-103A5 76 years, female 136.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 46.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.5
Samples: 4

Max nTPM: 42.6
Min nTPM: 31.6
Sample A Female 40.5
Sample B Female 31.6
Sample C Male 42.6
Sample D Male 39.4
Midbrain
nTPM: 46.6
Samples: 4

Max nTPM: 58.8
Min nTPM: 37.2
Sample A Female 58.8
Sample B Female 39.2
Sample C Male 51.1
Sample D Male 37.2
Periaqueductal gray
nTPM: 40.7
Samples: 3

Max nTPM: 43.4
Min nTPM: 37.0
Sample B Female 41.8
Sample C Male 43.4
Sample D Male 37.0
Superior colliculi
nTPM: 39.1
Samples: 4

Max nTPM: 43.8
Min nTPM: 36.0
Sample A Female 38.2
Sample B Female 36.0
Sample C Male 43.8
Sample D Male 38.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 29.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.1
Samples: 4

Max nTPM: 31.0
Min nTPM: 28.2
Sample A Male 28.5
Sample B Male 28.5
Sample C Female 31.0
Sample D Female 28.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69549651 Antisense, RP_050315_01_C02, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org