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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:40.6 nTPM
HPA Brain:41.6 nTPM
GTEx:40.6 nTPM
FANTOM5:68.5 Scaled Tags Per Million
Pig:32.0 nTPM
Mouse:26.3 nTPM
Allen mouse:0.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

41.6
Sample id Sample description nTPM
Amygdala
nTPM: 41.6
2814 Male, age 76, right hemisphere 52.3
2514 Male, age 75, right hemisphere 44.1
2695 Female, age 67, right hemisphere 41.1
1987 Female, age 91, left hemisphere 38.2
2517 Female, age 94, left hemisphere 32.1
Basal amygdala
nTPM: 33.5
1955 Male, age 76, both hemispheres 44.4
2110 Male, age 80, left hemisphere 38.8
2609 Male, age 75, right hemisphere 37.3
2685 Female, age 94, left hemisphere 31.4
2243 Female, age 91, right hemisphere 31.3
2827 Female, age 67, right hemisphere 17.6
Central amygdala
nTPM: 37.3
1905 Male, age 76, both hemispheres 50.5
2239 Male, age 80, left hemisphere 41.0
2515 Male, age 75, right hemisphere 35.4
2701 Female, age 91, right hemisphere 31.4
2826 Female, age 94, left hemisphere 28.1
Corticomedial amygdala
nTPM: 34.9
2240 Male, age 76, both hemispheres 39.3
2428 Male, age 75, right hemisphere 38.8
2242 Female, age 91, right hemisphere 37.5
2429 Female, age 94, left hemisphere 37.1
2829 Male, age 80, left hemisphere 34.6
2535 Female, age 67, right hemisphere 22.3
Lateral amygdala
nTPM: 33.4
1883 Male, age 76, both hemispheres 49.6
2516 Male, age 75, right hemisphere 37.3
2534 Female, age 94, left hemisphere 33.9
2256 Male, age 80, left hemisphere 32.2
2255 Female, age 91, right hemisphere 27.2
2830 Female, age 67, right hemisphere 20.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

40.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 40.6
Samples: 152

Max nTPM: 61.6
Min nTPM: 25.8
Std nTPM: 7.4
Median nTPM: 40.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 61.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 61.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 58.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 57.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 57.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 55.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 53.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 53.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 53.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 52.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 52.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 52.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 52.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 51.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 50.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 49.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 49.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 49.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 48.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 48.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 48.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 48.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 47.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 47.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 47.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 47.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 47.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 47.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 46.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 46.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 46.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 46.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 45.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 45.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 45.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 45.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 45.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 45.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 44.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 44.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 44.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 44.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 44.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 44.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 44.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 44.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 44.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 44.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 44.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 43.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 43.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 43.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 43.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 43.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 42.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 42.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 42.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 42.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 42.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 42.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 41.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 41.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 41.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 41.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 41.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 41.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 41.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 41.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 41.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 41.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 41.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 41.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 41.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 40.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 40.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 40.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 40.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 39.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 39.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 39.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 39.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 39.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 39.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 39.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 39.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 39.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 39.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 39.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 39.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 38.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 38.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 38.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 38.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 38.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 38.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 38.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 37.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 37.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 37.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 37.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 37.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 37.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 37.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 37.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 37.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 37.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 37.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 36.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 36.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 36.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 36.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 36.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 36.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 35.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 35.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 35.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 34.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 34.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 34.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 34.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 33.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 33.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 33.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 33.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 33.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 33.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 33.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 33.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 33.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 32.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 32.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 32.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 32.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 31.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 31.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 31.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 31.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 31.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 30.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 30.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 30.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 29.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 28.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 28.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 28.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 27.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 27.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 27.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 26.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 26.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 26.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 25.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

68.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 68.5
FF:10151-102I7 76 years, female 68.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.0
Pig sample Sample description nTPM
Amygdala
nTPM: 32.0
Samples: 4

Max nTPM: 33.5
Min nTPM: 29.8
Sample A Female 32.6
Sample B Female 29.8
Sample C Male 32.0
Sample D Male 33.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

26.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 26.4
Samples: 4

Max nTPM: 28.3
Min nTPM: 23.5
Sample A Male 26.9
Sample B Male 26.7
Sample C Female 23.5
Sample D Female 28.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.4
69549651 Antisense, RP_050315_01_C02, Mouse strain C57BL/6J (56 days, male) 0.4

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