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LLGL2
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  • LLGL2
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:53.9 nTPM
HPA:53.9 nTPM
GTEx:33.7 nTPM
FANTOM5:90.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA022913
Glandular cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

53.9
overview
Male, age 65
Small intestine sample 232
nTPM: 56.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 57.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 46
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 55.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 33.7
Samples: 187

Max nTPM: 108.5
Min nTPM: 0.9
Std nTPM: 26.2
Median nTPM: 28.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 108.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 92.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 88.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 88.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 86.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 85.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 83.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 80.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 79.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 79.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 77.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 75.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 74.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 72.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 72.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 71.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 71.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 70.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 70.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 70.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 70.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 70.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 69.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 69.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 68.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 68.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 67.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 65.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 64.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 64.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 62.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 62.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 62.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 62.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 61.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 61.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 59.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 59.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 59.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 59.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 59.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 58.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 57.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 57.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 56.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 56.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 56.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 55.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 55.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 54.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 54.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 54.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 54.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 53.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 52.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 51.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 51.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 50.8
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 49.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 48.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 48.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 48.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 48.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 46.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 46.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 45.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 44.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 44.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 44.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 43.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 43.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 42.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 42.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 41.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 41.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 41.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 39.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 38.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 38.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 37.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 34.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 34.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 33.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 33.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 33.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 32.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 32.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 32.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 32.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 31.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 30.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 29.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 29.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 28.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 28.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 28.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 28.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 27.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 26.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 26.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 25.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 25.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 25.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 23.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 22.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 22.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 21.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 20.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 19.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 19.3
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 19.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 19.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 18.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 16.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 16.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 15.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 15.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 15.1
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 15.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 14.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 14.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 14.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 14.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 14.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 14.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 13.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 13.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 13.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 13.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 12.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 12.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 11.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 11.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 11.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 11.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 11.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 10.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 10.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 10.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 9.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 9.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 9.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 9.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 8.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 8.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 7.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 7.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 7.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 7.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 6.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 6.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 5.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 5.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 5.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 5.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 4.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 4.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 4.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 4.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 4.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 4.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 4.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 4.4
GTEX-1192X-2526-SM-59868 50-59 years, male 4.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 4.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 4.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 3.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 3.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 3.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 3.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 2.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 2.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 2.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 2.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 2.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 2.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1.7
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1.5
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 0.9
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

90.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 90.7
FF:10024-101D6 15,40,85 years, mixed 90.7

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